estExt_fgeneshTA2_pg.C_60554 (Trichoplax adhaerens)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 estExt_fgeneshTA2_pg.C_60554 T17273_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.775
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.775
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.722
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.722
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.722
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgeneshTA2_pg.C_60554 CSD 28 98

Links

Other CSD family RBPs
Other Trichoplax adhaerens RBPs

168 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.803
PHUM156710 Pediculus humanus PHUM156710 I 0.803
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.803
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.789
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.789
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.789
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.778
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.778
csda Xenopus tropicalis ENSXETG00000016239 I 0.778
GE20150 Drosophila yakuba FBgn0237472 I 0.775
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.775
PHUM156720 Pediculus humanus PHUM156720 I 0.775
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.775
GD12750 Drosophila simulans FBgn0184477 I 0.775
GM24682 Drosophila sechellia FBgn0179545 I 0.775
GF10852 Drosophila ananassae FBgn0087892 I 0.775
yps Drosophila melanogaster FBgn0022959 I 0.775
AAEL001375 Aedes aegypti AAEL001375 I 0.775
GL15684 Drosophila persimilis FBgn0153288 I 0.775
GK16710 Drosophila willistoni FBgn0218712 I 0.775
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.775
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.775
CSDA Cavia porcellus ENSCPOG00000011329 I 0.764
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.764
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.764
CSDA Loxodonta africana ENSLAFG00000017247 I 0.764
Csda Dipodomys ordii ENSDORG00000009103 I 0.764
ybx1 Danio rerio ENSDARG00000004757 I 0.764
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.764
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.764
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.764
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.764
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.764
Csda Rattus norvegicus ENSRNOG00000005480 I 0.764
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.764
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.764
YBX1 Microcebus murinus ENSMICG00000014984 I 0.764
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.764
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.764
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.764
YB-1 Homo sapiens ENSG00000065978 D 0.764
CSDA Homo sapiens ENSG00000060138 I 0.764
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.764
CSDA Macaca mulatta ENSMMUG00000022469 I 0.764
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.764
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.764
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.764
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.764
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.764
LOC100065107 Equus caballus ENSECAG00000013777 I 0.764
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.764
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.764
LOC100067336 Equus caballus ENSECAG00000023592 I 0.764
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.764
CSDA Echinops telfairi ENSETEG00000002557 I 0.764
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.764
CSDA Sus scrofa ENSSSCG00000000633 I 0.764
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.764
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.764
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.764
AAA49715 Xenopus laevis AAA49715 I 0.764
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.764
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.764
AAH41191 Xenopus laevis AAH41191 I 0.764
Q00436 Xenopus laevis Q00436 I 0.764
AAI06324 Xenopus laevis AAI06324 I 0.764
AAI30161 Xenopus laevis AAI30161 I 0.764
CAA42778 Xenopus laevis CAA42778 I 0.764
P21573 Xenopus laevis P21573 I 0.764
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.764
CSDA Pan troglodytes ENSPTRG00000004681 I 0.764
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.764
Ybx1 Mus musculus ENSMUSG00000028639 I 0.764
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.764
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.764
CSDA Monodelphis domestica ENSMODG00000018248 I 0.764
AAH42217 Xenopus laevis AAH42217 I 0.764
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.764
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.764
Csda Mus musculus ENSMUSG00000030189 I 0.764
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.764
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.764
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.764
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.761
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.761
AGAP006108 Anopheles gambiae AGAP006108 I 0.761
GI13673 Drosophila mojavensis FBgn0136428 I 0.761
GH16919 Drosophila grimshawi FBgn0124390 I 0.761
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.761
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.761
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.761
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.761
GJ14010 Drosophila virilis FBgn0201228 I 0.761
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.750
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.750
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.750
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.750
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.750
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.750
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.750
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.750
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.750
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.750
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.746
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.746
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.746
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.746
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.746
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.746
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.746
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.746
YBX2 Sus scrofa ENSSSCG00000017938 I 0.736
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.736
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.736
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.736
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.736
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.736
YBX2 Procavia capensis ENSPCAG00000008019 I 0.736
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.736
LOC100072964 Equus caballus ENSECAG00000009996 I 0.736
YBX2 Canis familiaris ENSCAFG00000016128 I 0.736
AAI55915 Xenopus laevis AAI55915 I 0.736
P21574 Xenopus laevis P21574 I 0.736
ybx2-a Xenopus laevis AAI69706 D 0.736
AAI69704 Xenopus laevis AAI69704 I 0.736
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.736
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.736
AAA49716 Xenopus laevis AAA49716 I 0.736
Ybx2 Mus musculus ENSMUSG00000018554 I 0.736
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.736
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.736
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.736
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.736
cey-1 Caenorhabditis elegans F33A8.3 I 0.732
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.732
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.732
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.732
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.732
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.732
CRE01789 Caenorhabditis remanei CRE01789 I 0.732
CBN16711 Caenorhabditis brenneri CBN16711 I 0.732
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.722
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.722
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.722
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.722
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.722
YBX2 Sorex araneus ENSSARG00000000488 I 0.722
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.722
YBX2 Homo sapiens ENSG00000006047 D 0.722
AAA49924 Xenopus laevis AAA49924 I 0.722
AAI55914 Xenopus laevis AAI55914 I 0.722
P45441 Xenopus laevis P45441 I 0.722
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.722
ISCW005281 Ixodes scapularis ISCW005281 I 0.718
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.718
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.718
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.718
Bm1_57515 Brugia malayi Bm1_57515 I 0.718
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.718
CBG02981 Caenorhabditis briggsae CBG02981 I 0.718
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.718
CSDA Procavia capensis ENSPCAG00000001397 I 0.708
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.708
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.708
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.708
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.704
133388 Helobdella robusta 133388 I 0.704
CJA05984 Caenorhabditis japonica CJA05984 I 0.704