LOC100065107 (Equus caballus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSECAG00000013777 T16826_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000011703 CSD 5 75

Links

Other CSD family RBPs
Other Equus caballus RBPs

213 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AGAP005127 Anopheles gambiae AGAP005127 N 0.000
amel4_ncbi_hmm812 Apis mellifera amel4_ncbi_hmm812 N 0.000
BGIBMGA004109 Bombyx mori BGIBMGA004109 N 0.000
CPIJ002280 Culex quinquefasciatus CPIJ002280 N 0.000
CpipJ_CPIJ002280 Culex pipiens CpipJ_CPIJ002280 N 0.000
DGIL_AUG5s1025g3t1 Acyrtosiphon pisum DGIL_AUG5s1025g3t1 N 0.000
DGIL_AUG5s12809g1t1 Acyrtosiphon pisum DGIL_AUG5s12809g1t1 N 0.000
DGIL_AUG5s14548g2t1 Acyrtosiphon pisum DGIL_AUG5s14548g2t1 N 0.000
GA15511-RA Drosophila pseudoobscura FBgn0075528 N 0.000
GD10528 Drosophila simulans FBgn0182299 N 0.000
GE19164 Drosophila yakuba FBgn0236524 N 0.000
GF13651 Drosophila ananassae FBgn0090679 N 0.000
GG23320 Drosophila erecta FBgn0115471 N 0.000
GH20604 Drosophila grimshawi FBgn0128067 N 0.000
GI20446 Drosophila mojavensis FBgn0143182 N 0.000
GJ20116 Drosophila virilis FBgn0207256 N 0.000
GK10751 Drosophila willistoni FBgn0212763 N 0.000
GL11478 Drosophila persimilis FBgn0149087 N 0.000
GM20997 Drosophila sechellia FBgn0175878 N 0.000
NCBI_GNO_14500057 Daphnia pulex NCBI_GNO_14500057 N 0.000
nito Drosophila melanogaster FBgn0027548 N 0.000
PHUM308070 Pediculus humanus PHUM308070 N 0.000