BGIOSIBCE006059 (Oryza indica)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 BGIOSIBCE006059 T26196_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE006059 RanBP ZF 4 33
BGIOSIBCE006059 RanBP ZF 66 93
BGIOSIBCE006059 RanBP ZF 131 155

Links

Other RanBP ZF family RBPs
Other Oryza indica RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29841.m002811 Ricinus communis 29841.m002811 N 0.710
29848.m004659 Ricinus communis 29848.m004659 N 0.745
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.742
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.742
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.728
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.723
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.731
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.742
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.857
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.745
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.713
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.766
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.713
fgenesh1_pm.C_scaffold_87000018 Selaginella moellendorfii fgenesh1_pm.C_scaffold_87000018 N 0.703
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.723
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.723
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.745
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.734
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.813
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.835
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.711
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.753
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.745
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.922
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.711
MDP0000240686 Malus x domestica MDP0000240686 N 0.734
MDP0000269288 Malus x domestica MDP0000269288 N 0.713
MDP0000876872 Malus x domestica MDP0000876872 N 0.723
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.702
ppa012687m Prunus persica ppa012687m N 0.745
ppa012737m Prunus persica ppa012737m N 0.734
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.813
SB10G002790 Sorghum bicolor Sb10g002790 N 0.711
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.713
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.717