Medtr3g136630 (Medicago truncatula)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 Medtr3g136630 T27672_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g136630.1 RanBP ZF 3 30
Medtr3g136630.1 RanBP ZF 63 93
Medtr3g136630.1 RanBP ZF 130 161

Links

Other RanBP ZF family RBPs
Other Medicago truncatula RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.936
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.936
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.883
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.830
29848.m004659 Ricinus communis 29848.m004659 N 0.830
MDP0000269288 Malus x domestica MDP0000269288 N 0.830
MDP0000240686 Malus x domestica MDP0000240686 N 0.830
ppa012687m Prunus persica ppa012687m N 0.830
MDP0000876872 Malus x domestica MDP0000876872 N 0.830
ppa012737m Prunus persica ppa012737m N 0.830
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.819
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.819
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.819
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.819
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.815
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.815
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.809
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.809
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.809
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.806
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.798
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.798
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.798
29841.m002811 Ricinus communis 29841.m002811 N 0.796
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.787
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.785
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.783
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.766
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.766
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.755
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.755
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.745
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.745
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.745
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.734
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.702