A9PB85_POPTR (Populus trichocarpa)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 POPTR_0001s17280 T27077_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s17280.1 RanBP ZF 3 32
POPTR_0001s17280.1 RanBP ZF 54 83
POPTR_0001s17280.1 RanBP ZF 114 145

Links

Other RanBP ZF family RBPs
Other Populus trichocarpa RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.968
29841.m002811 Ricinus communis 29841.m002811 N 0.946
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.924
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.924
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.924
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.892
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.882
MDP0000240686 Malus x domestica MDP0000240686 N 0.872
ppa012687m Prunus persica ppa012687m N 0.872
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.871
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.862
29848.m004659 Ricinus communis 29848.m004659 N 0.862
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.862
MDP0000269288 Malus x domestica MDP0000269288 N 0.862
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.862
MDP0000876872 Malus x domestica MDP0000876872 N 0.862
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.860
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.860
ppa012737m Prunus persica ppa012737m N 0.851
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.851
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.840
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.840
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.840
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.830
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.806
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.806
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.787
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.787
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.787
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.787
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.787
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.785
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.777
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.766
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.766
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.750
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.742
SB10G002790 Sorghum bicolor Sb10g002790 N 0.739
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.728
BRADI1G51070 Brachypodium distachyon BRADI1G51070 N 0.707