XM_002872121.1 (Arabidopsis lyrata)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 fgenesh2_kg.6__2541__AT5G25490.1 T27023_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__2541__AT5G25490.1 RanBP ZF 3 32
fgenesh2_kg.6__2541__AT5G25490.1 RanBP ZF 60 91
fgenesh2_kg.6__2541__AT5G25490.1 RanBP ZF 132 163

Links

Other RanBP ZF family RBPs
Other Arabidopsis lyrata RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.936
29848.m004659 Ricinus communis 29848.m004659 N 0.851
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.830
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.819
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.819
ppa012737m Prunus persica ppa012737m N 0.819
MDP0000269288 Malus x domestica MDP0000269288 N 0.819
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.809
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.809
MDP0000876872 Malus x domestica MDP0000876872 N 0.809
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.809
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.798
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.798
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.798
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.787
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.787
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.787
MDP0000240686 Malus x domestica MDP0000240686 N 0.787
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.777
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.777
ppa012687m Prunus persica ppa012687m N 0.777
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.766
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.766
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.766
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.755
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.755
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.755
29841.m002811 Ricinus communis 29841.m002811 N 0.755
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.745
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.745
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.745
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.734
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.734
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.734
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.723
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.713
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.702
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.702