B9GWD5_POPTR (Populus trichocarpa)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 POPTR_0003s05990 T27079_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s05990.1 RanBP ZF 3 32
POPTR_0003s05990.1 RanBP ZF 54 84
POPTR_0003s05990.1 RanBP ZF 114 145
POPTR_0003s05990.2 RanBP ZF 3 32
POPTR_0003s05990.2 RanBP ZF 54 84
POPTR_0003s05990.2 RanBP ZF 114 145

Links

Other RanBP ZF family RBPs
Other Populus trichocarpa RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.968
29841.m002811 Ricinus communis 29841.m002811 N 0.935
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.925
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.914
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.914
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.903
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.882
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.872
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.872
MDP0000240686 Malus x domestica MDP0000240686 N 0.872
ppa012687m Prunus persica ppa012687m N 0.872
29848.m004659 Ricinus communis 29848.m004659 N 0.872
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.872
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.871
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.871
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.862
MDP0000269288 Malus x domestica MDP0000269288 N 0.862
MDP0000876872 Malus x domestica MDP0000876872 N 0.862
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.860
ppa012737m Prunus persica ppa012737m N 0.851
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.851
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.851
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.840
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.830
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.809
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.798
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.798
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.798
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.796
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.787
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.787
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.787
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.785
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.777
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.777
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.742
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.731
SB10G002790 Sorghum bicolor Sb10g002790 N 0.731
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.720