B9IKV1_POPTR (Populus trichocarpa)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 POPTR_0018s01490 T27096_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s01490.1 RanBP ZF 3 32
POPTR_0018s01490.1 RanBP ZF 56 86
POPTR_0018s01490.1 RanBP ZF 117 148

Links

Other RanBP ZF family RBPs
Other Populus trichocarpa RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.968
29848.m004659 Ricinus communis 29848.m004659 N 0.915
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.904
MDP0000876872 Malus x domestica MDP0000876872 N 0.894
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.883
MDP0000269288 Malus x domestica MDP0000269288 N 0.883
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.872
ppa012737m Prunus persica ppa012737m N 0.872
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.871
MDP0000240686 Malus x domestica MDP0000240686 N 0.862
ppa012687m Prunus persica ppa012687m N 0.862
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.862
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.862
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.860
29841.m002811 Ricinus communis 29841.m002811 N 0.860
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.860
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.860
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.860
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.851
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.840
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.839
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.839
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.830
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.830
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.828
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.819
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.819
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.819
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.809
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.806
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.806
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.787
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.787
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.785
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.777
SB10G002790 Sorghum bicolor Sb10g002790 N 0.774
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.766
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.753
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.742
BRADI1G51070 Brachypodium distachyon BRADI1G51070 N 0.731