MDP0000876872 (Malus x domestica)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 MDP0000876872 T27829_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000876872 RanBP ZF 3 32
MDP0000876872 RanBP ZF 61 92
MDP0000876872 RanBP ZF 127 158

Links

Other RanBP ZF family RBPs
Other Malus x domestica RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa012737m Prunus persica ppa012737m N 0.957
MDP0000269288 Malus x domestica MDP0000269288 N 0.947
MDP0000240686 Malus x domestica MDP0000240686 N 0.904
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.904
29848.m004659 Ricinus communis 29848.m004659 N 0.904
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.894
ppa012687m Prunus persica ppa012687m N 0.894
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.894
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.894
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.883
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.883
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.883
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.872
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.872
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.872
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.862
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.862
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.862
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.862
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.851
29841.m002811 Ricinus communis 29841.m002811 N 0.840
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.830
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.819
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.809
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.809
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.809
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.809
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.809
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.809
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.798
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.798
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.798
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.787
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.787
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.766
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.723
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.702
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.702