Cucsa.096580 (Cucumis sativus)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 Cucsa.096580 T27341_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.096580.1 RanBP ZF 3 32
Cucsa.096580.1 RanBP ZF 50 81
Cucsa.096580.1 RanBP ZF 114 145
Cucsa.096580.2 RanBP ZF 3 32
Cucsa.096580.2 RanBP ZF 50 81
Cucsa.096580.2 RanBP ZF 114 145
Cucsa.096580.3 RanBP ZF 3 32
Cucsa.096580.3 RanBP ZF 50 81
Cucsa.096580.3 RanBP ZF 114 145

Links

Other RanBP ZF family RBPs
Other Cucumis sativus RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000240686 Malus x domestica MDP0000240686 N 0.904
ppa012687m Prunus persica ppa012687m N 0.904
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.894
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.894
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.894
MDP0000269288 Malus x domestica MDP0000269288 N 0.883
ppa012737m Prunus persica ppa012737m N 0.883
MDP0000876872 Malus x domestica MDP0000876872 N 0.883
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.883
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.872
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.872
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.872
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.872
29848.m004659 Ricinus communis 29848.m004659 N 0.862
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.862
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.851
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.851
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.851
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.840
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.840
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.840
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.840
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.830
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.830
29841.m002811 Ricinus communis 29841.m002811 N 0.819
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.809
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.809
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.809
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.798
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.798
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.798
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.798
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.787
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.787
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.787
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.766
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.713
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.702
SB10G002790 Sorghum bicolor Sb10g002790 N 0.702