CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NUP153
(
Danio rerio
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
ENSDARG00000020323
T26368_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000033046
RanBP ZF
634
663
PAGSWNCGTCMLQNKPSDKKCVACLAPQPN
ENSDARP00000033046
RanBP ZF
687
716
PAGSWECDTCLVSNKPDAVKCVACDTAKPG
ENSDARP00000033046
RanBP ZF
761
790
PEGAWDCDVCMVQNKAQDLKCVACLTAKPG
ENSDARP00000033046
RanBP ZF
820
849
PEGSWECDVCCVQNKADDQQCVACQSAKPG
Links
Other
RanBP ZF
family RBPs
Other
Danio rerio
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A5D7H7_BOVIN
Bos taurus
ENSBTAG00000010235
N
0.000
C14orf21
Procavia capensis
ENSPCAG00000002545
N
0.000
C14orf21
Oryctolagus cuniculus
ENSOCUG00000002948
N
0.000
C14orf21
Loxodonta africana
ENSLAFG00000028287
N
0.000
C14orf21
Homo sapiens
ENSG00000196943
N
0.000
C14orf21
Cavia porcellus
ENSCPOG00000014406
N
0.000
C14orf21
Sus scrofa
ENSSSCG00000001990
N
0.000
ENSPPYG00000005698
Pongo pygmaeus
ENSPPYG00000005698
N
0.000
LOC100054451
Equus caballus
ENSECAG00000024171
N
0.000
LOC100396802
Callithrix jacchus
ENSCJAG00000006675
N
0.000
RGD1308396
Rattus norvegicus
ENSRNOG00000020321
N
0.000