CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FVEG_11271
(
Fusarium verticillioides
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FVEG_11271
T29381_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FVEG_11271T0
RRM
127
197
IYIGRIPHGFYEHEMRQYFEQFGPIVALRLSRNKKTGASKHYAFVKFEEASTAEIVCKTMDNYLLFGHILK
Links
Other
RRM
family RBPs
Other
Fusarium verticillioides
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AMAG_03225
Allomyces macrogynus
AMAG_03225
N
0.704
estExt_fgenesh1_pg.C_90140
Trichoderma atroviride
estExt_fgenesh1_pg.C_90140
N
0.845
e_gw1.1.997.1
Trichoderma reesei
e_gw1.1.997.1
N
0.845
e_gw1.10.335.1
Mucor circinelloides
e_gw1.10.335.1
N
0.704
e_gw1.11.592.1
Nectria haematococca
e_gw1.11.592.1
N
0.944
e_gw1.17.425.1
Trichoderma virens
e_gw1.17.425.1
N
0.845
fgenesh1_pg.C_scaffold_1000567
Sporobolomyces roseus
fgenesh1_pg.C_scaffold_1000567
N
0.704
fgenesh1_pg.C_scaffold_2000511
Cryphonectria parasitica
fgenesh1_pg.C_scaffold_2000511
N
0.789
fgenesh1_pm.00609_#_590
Aspergillus carbonarius
fgenesh1_pm.00609_#_590
N
0.704
FGSG_04392
Fusarium graminearum
FGSG_04392
N
0.972
FOXG_13842
Fusarium oxysporum
FOXG_13842
N
1.000
GLRG_08650
Colletotrichum graminicola
GLRG_08650
N
0.775
GSTUMT00006382001
Tuber melanosporum
GSTUMT00006382001
N
0.718
MGG_12370
Magnaporthe oryzae
MGG_12370
N
0.761
NFIA_109800
Neosartorya fischeri
CADNFIAG00009499
N
0.704
PABG_04180
Paracoccidioides brasiliensis
PABG_04180
N
0.718
SS1G_03893
Sclerotinia sclerotiorum
SS1G_03893
N
0.718