LOC100409217 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000001768 T35472_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.990
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.725
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000003178 RRM 63 130
ENSCJAP00000003178 RRM 143 210
ENSCJAP00000003178 RRM 238 302
ENSCJAP00000003179 RRM 63 130
ENSCJAP00000003179 RRM 143 210
ENSCJAP00000003179 RRM 238 302
ENSCJAP00000045813 RRM 63 130
ENSCJAP00000045813 RRM 143 210
ENSCJAP00000045813 RRM 238 302

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.704
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.743
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.743
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.990
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.708
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.975
ENSCPOG00000019272 Cavia porcellus ENSCPOG00000019272 I 0.945
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.955
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.718
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.743
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.752
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.734
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.990
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.738
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.712
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.725
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.734
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.739
LOC100063743 Equus caballus ENSECAG00000004400 I 0.733
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.743
Rbm46 Mus musculus ENSMUSG00000033882 I 0.980
RBM46 Oryzias latipes ENSORLG00000002429 I 0.722
RBM46 Ochotona princeps ENSOPRG00000007136 I 0.881
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.985
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.990
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.990
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.946
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.990
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.990
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.990
RBM46 Takifugu rubripes ENSTRUG00000004237 I 0.761
RBM46 Tetraodon nigroviridis ENSTNIG00000008714 I 0.737
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.930
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.975
RBM46 Sus scrofa ENSSSCG00000008994 I 0.990
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.970
RBM46 Sorex araneus ENSSARG00000006520 I 0.990
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.990
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.990
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.990
RBM46 Gallus gallus ENSGALG00000009278 I 0.867
Rbm46 Dipodomys ordii ENSDORG00000006405 I 0.955
RBM46 Echinops telfairi ENSETEG00000014902 I 0.990
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.980
RBM46 Felis catus ENSFCAG00000009246 I 0.975
RBM46 Homo sapiens ENSG00000151962 D 0.990
rbm46 Danio rerio ENSDARG00000079452 I 0.816
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.990
RBM46 Equus caballus ENSECAG00000007649 I 0.975
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.945
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.985
RBM46 Meleagris gallopavo ENSMGAG00000001457 I 0.783
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.985
RBM46 Bos taurus ENSBTAG00000001696 I 0.990
RBM46 Canis familiaris ENSCAFG00000008473 I 0.990
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.985
RBM46_XENTR Xenopus tropicalis ENSXETG00000022412 I 0.837
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.723
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.743
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.743
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.743
RBM47 Sus scrofa ENSSSCG00000008796 I 0.743
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.743
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.743
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.723
RBM47 Danio rerio ENSDARG00000061985 I 0.728
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.743
RBM47 Echinops telfairi ENSETEG00000009194 I 0.743
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.743
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.752
Rbm47 Mus musculus ENSMUSG00000070780 I 0.738
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.743
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.738
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.743
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.743
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.743
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.728
RBM47 Oryzias latipes ENSORLG00000005847 I 0.728
RBM47 Procavia capensis ENSPCAG00000011879 I 0.743
RBM47 Homo sapiens ENSG00000163694 I 0.743
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.743
RBM47 Felis catus ENSFCAG00000012399 I 0.743
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.743
RBM47 Sorex araneus ENSSARG00000001735 I 0.743
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.738
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.733
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.704
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.729
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.729