CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMEUG00000003054
(
Macropus eugenii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMEUG00000003054
T38171_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.944
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.915
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMEUP00000002787
RRM
353
422
IFCGDLGNEVNDDILARAFGRFPSFLKAKVIRDKRGKTKGYGFVSFKDPGDYVRAMREMNGKYVGSRPVK
Links
Other
RRM
family RBPs
Other
Macropus eugenii
RBPs
47 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A2VDB3
Xenopus laevis
A2VDB3
I
0.845
AAI29577
Xenopus laevis
AAI29577
I
0.803
AAI29698
Xenopus laevis
AAI29698
I
0.845
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.887
Aqu1.218430
Amphimedon queenslandica
Aqu1.218430
I
0.704
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.732
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.887
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.887
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.859
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.789
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.789
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.704
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.746
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.887
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.887
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.887
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.887
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.887
RBM42
Sorex araneus
ENSSARG00000010724
I
0.887
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.887
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.887
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.859
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.859
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.887
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.887
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.859
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.859
RBM42
Homo sapiens
ENSG00000126254
D
0.887
RBM42
Felis catus
ENSFCAG00000006376
I
0.761
RBM42
Echinops telfairi
ENSETEG00000007878
I
0.732
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.887
rbm42
Danio rerio
ENSDARG00000039910
I
0.845
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.887
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.887
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.887
RBM42
Loxodonta africana
ENSLAFG00000014993
N
0.800
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.887
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.887
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.887
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.887
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.887
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.887
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.887
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.887
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.873
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.887
XP_002167334.1
Hydra magnipapillata
XP_002167334.1
I
0.704