RBMXL3 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000001692 T40086_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMX
M344_0.6 		Homo sapiens CCM SELEX
Cook et al.(2011)
922_19282290 		0.901
RBMY1A1
M247_0.6 		Homo sapiens CWCAA SELEX
Cook et al.(2011)
1053_17318228 		0.704
RBMY1A1
M246_0.6 		Homo sapiens CWCAA SELEX
Cook et al.(2011)
1052_17318228 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000002101 RRM 10 80
ENSORLP00000002104 RRM 10 80

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH70649 Xenopus laevis AAH70649 I 0.887
Ame_R008043 Ailuropoda melanoleuca Ame_R008043 I 0.901
Ame_R020019 Ailuropoda melanoleuca Ame_R020019 I 0.732
D3JUI8_BOVIN Bos taurus ENSBTAG00000013308 I 0.901
D3ZT57_RAT Rattus norvegicus ENSRNOG00000021946 I 0.789
D4AE41_RAT Rattus norvegicus ENSRNOG00000028858 I 0.873
ENSACAG00000009551 Anolis carolinensis ENSACAG00000009551 I 0.901
ENSCJAG00000013619 Callithrix jacchus ENSCJAG00000013619 I 0.817
ENSCJAG00000016247 Callithrix jacchus ENSCJAG00000016247 I 0.789
ENSDNOG00000009042 Dasypus novemcinctus ENSDNOG00000009042 I 0.803
ENSLAFG00000005568 Loxodonta africana ENSLAFG00000005568 I 0.901
ENSLAFG00000014037 Loxodonta africana ENSLAFG00000014037 I 0.817
ENSLAFG00000020807 Loxodonta africana ENSLAFG00000020807 I 0.789
ENSLAFG00000022169 Loxodonta africana ENSLAFG00000022169 I 0.859
ENSMEUG00000015892 Macropus eugenii ENSMEUG00000015892 I 0.845
ENSMUSG00000049235 Mus musculus ENSMUSG00000049235 I 0.887
ENSOANG00000011670 Ornithorhynchus anatinus ENSOANG00000011670 I 0.901
ENSOCUG00000021095 Oryctolagus cuniculus ENSOCUG00000021095 I 0.845
ENSOCUG00000028230 Oryctolagus cuniculus ENSOCUG00000028230 I 0.901
ENSPPYG00000001177 Pongo pygmaeus ENSPPYG00000001177 I 0.887
ENSPPYG00000019152 Pongo pygmaeus ENSPPYG00000019152 I 0.845
ENSPPYG00000020771 Pongo pygmaeus ENSPPYG00000020771 I 0.901
ENSPTRG00000032590 Pan troglodytes ENSPTRG00000032590 I 0.704
ENSTBEG00000001154 Tupaia belangeri ENSTBEG00000001154 I 0.803
ENSTTRG00000003238 Tursiops truncatus ENSTTRG00000003238 I 0.789
ENSVPAG00000002726 Vicugna pacos ENSVPAG00000002726 I 0.803
HNRPG_BOVIN Bos taurus ENSBTAG00000036140 I 0.817
HNRPG_BOVIN Bos taurus ENSBTAG00000011807 I 0.817
HNRPG_PANTR Pan troglodytes ENSPTRG00000000933 I 0.887
LOC100054583 Equus caballus ENSECAG00000021380 I 0.901
LOC100406653 Callithrix jacchus ENSCJAG00000003626 I 0.901
LOC100415631 Callithrix jacchus ENSCJAG00000022240 I 0.845
LOC750990 Pan troglodytes ENSPTRG00000028802 I 0.704
O97560_MACEU Macropus eugenii ENSMEUG00000013834 I 0.845
Q2VIN1_9PRIM Gorilla gorilla ENSGGOG00000012016 I 0.887
Q52NW1_PANTR Pan troglodytes ENSPTRG00000028822 I 0.704
Q5ZKQ9_CHICK Gallus gallus ENSGALG00000006457 I 0.901
rbmx Danio rerio ENSDARG00000014244 I 0.859
Rbmx Rattus norvegicus ENSRNOG00000000866 I 0.901
RBMX Taeniopygia guttata ENSTGUG00000002135 I 0.901
RBMX Homo sapiens ENSG00000147274 D 0.901
RBMX Pan troglodytes ENSPTRG00000034071 I 0.845
RBMX Tarsius syrichta ENSTSYG00000009555 I 0.887
RBMX Cavia porcellus ENSCPOG00000012164 I 0.901
RBMX Felis catus ENSFCAG00000004779 I 0.789
RBMX Meleagris gallopavo ENSMGAG00000003594 I 0.901
Rbmx Mus musculus ENSMUSG00000031134 I 0.901
RBMX Oryctolagus cuniculus ENSOCUG00000024093 I 0.901
RBMXL1 Gorilla gorilla ENSGGOG00000027619 I 0.901
RBMXL1 Callithrix jacchus ENSCJAG00000032899 I 0.901
RBMXL1 Dasypus novemcinctus ENSDNOG00000017199 I 0.901
RBMXL1 Sus scrofa ENSSSCG00000012703 I 0.901
RBMXL1 Tursiops truncatus ENSTTRG00000007322 I 0.901
RBMXL1 Myotis lucifugus ENSMLUG00000013209 I 0.901
RBMXL1 Microcebus murinus ENSMICG00000006856 I 0.901
RBMXL1 Vicugna pacos ENSVPAG00000005826 I 0.901
RBMXL1 Homo sapiens ENSG00000213516 I 0.887
RBMXL1 Canis familiaris ENSCAFG00000018962 I 0.889
RBMXL1 Oryctolagus cuniculus ENSOCUG00000007220 I 0.901
Rbmxl2 Mus musculus ENSMUSG00000073894 I 0.817
Rbmxl2 Dipodomys ordii ENSDORG00000010267 I 0.831
RBMXL2 Homo sapiens ENSG00000170748 I 0.873
RBMXL2 Pan troglodytes ENSPTRG00000003312 I 0.873
RBMXL3 Takifugu rubripes ENSTRUG00000006031 I 0.930
RBMXL3 Tetraodon nigroviridis ENSTNIG00000016844 I 0.944
RBMXL3 Callithrix jacchus ENSCJAG00000006948 I 0.718
RBMXL3 Homo sapiens ENSG00000175718 I 0.761
RBMXL3 Gorilla gorilla ENSGGOG00000027260 I 0.746
RBMXL3 Gasterosteus aculeatus ENSGACG00000017237 I 1.000
Rbmxrt Mus musculus ENSMUSG00000037070 I 0.887
Rbmxrtl Rattus norvegicus ENSRNOG00000012138 I 0.873
XM_001367159.1 Monodelphis domestica ENSMODG00000014054 I 0.845
XR_019934.1 Pan troglodytes ENSPTRG00000032589 I 0.704
XR_020119.1 Pan troglodytes ENSPTRG00000028826 I 0.704
XR_020159.1 Pan troglodytes ENSPTRG00000032591 I 0.704
XR_023586.1 Pan troglodytes ENSPTRG00000004121 I 0.873