SAFB (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000003567 T42218_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000008370 RRM 361 431
ENSTRUP00000008371 RRM 392 462
ENSTRUP00000008372 RRM 381 451
ENSTRUP00000008373 RRM 375 445

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

135 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
168846 Helobdella robusta 168846 N 0.761
A7E314_BOVIN Bos taurus ENSBTAG00000035585 N 0.901
AAEL001352 Aedes aegypti AAEL001352 N 0.775
AAI00172 Xenopus laevis AAI00172 N 0.746
AGAP001298 Anopheles gambiae AGAP001298 N 0.746
amel4_ncbi_hmm13354 Apis mellifera amel4_ncbi_hmm13354 N 0.803
Ame_R015170 Ailuropoda melanoleuca Ame_R015170 N 0.732
Ame_R016388 Ailuropoda melanoleuca Ame_R016388 N 0.887
Ame_R016389 Ailuropoda melanoleuca Ame_R016389 N 0.901
CG6995 Drosophila melanogaster FBgn0039229 N 0.704
CPIJ012814 Culex quinquefasciatus CPIJ012814 N 0.761
CpipJ_CPIJ012814 Culex pipiens CpipJ_CPIJ012814 N 0.761
DGIL_AUG5s7140g4t1 Acyrtosiphon pisum DGIL_AUG5s7140g4t1 N 0.775
DGIL_AUG5s8592g2t1 Acyrtosiphon pisum DGIL_AUG5s8592g2t1 N 0.761
ENSACAG00000016893 Anolis carolinensis ENSACAG00000016893 N 0.915
ENSACAG00000016928 Anolis carolinensis ENSACAG00000016928 N 0.831
ENSBTAG00000007875 Bos taurus ENSBTAG00000007875 N 0.901
ENSDARG00000017150 Danio rerio ENSDARG00000017150 N 0.746
ENSMGAG00000001051 Meleagris gallopavo ENSMGAG00000001051 N 0.915
ENSMGAG00000001101 Meleagris gallopavo ENSMGAG00000001101 N 0.873
ENSMODG00000001236 Monodelphis domestica ENSMODG00000001236 N 0.887
ENSOANG00000013644 Ornithorhynchus anatinus ENSOANG00000013644 N 0.915
ENSPPYG00000006515 Pongo pygmaeus ENSPPYG00000006515 N 0.732
ENSPPYG00000009427 Pongo pygmaeus ENSPPYG00000009427 N 0.915
ENSPPYG00000009428 Pongo pygmaeus ENSPPYG00000009428 N 0.901
ENSSSCG00000004591 Sus scrofa ENSSSCG00000004591 N 0.718
ENSSSCG00000004592 Sus scrofa ENSSSCG00000004592 N 0.718
ENSSSCG00000013523 Sus scrofa ENSSSCG00000013523 N 0.915
ENSTNIG00000015470 Tetraodon nigroviridis ENSTNIG00000015470 N 0.986
estExt_fgenesh1_pg.C_1060073 Nematostella vectensis estExt_fgenesh1_pg.C_1060073 N 0.718
estExt_fgenesh2_pg.C_3630023 Branchiostoma floridae estExt_fgenesh2_pg.C_3630023 N 0.887
estExt_fgenesh2_pg.C_4200008 Branchiostoma floridae estExt_fgenesh2_pg.C_4200008 N 0.887
estExt_fgenesh2_pg.C_sca_50258 Lottia gigantea estExt_fgenesh2_pg.C_sca_50258 N 0.803
fgenesh1_pm.C_scaffold_151000005 Capitella teleta fgenesh1_pm.C_scaffold_151000005 N 0.859
GA26852-RA Drosophila pseudoobscura FBgn0248225 N 0.704
GD21133 Drosophila simulans FBgn0192585 N 0.704
GE23518 Drosophila yakuba FBgn0240697 N 0.704
GF16243 Drosophila ananassae FBgn0093265 N 0.704
GG11323 Drosophila erecta FBgn0103624 N 0.704
GH19115 Drosophila grimshawi FBgn0126582 N 0.704
GI23570 Drosophila mojavensis FBgn0146296 N 0.704
GJ23544 Drosophila virilis FBgn0210641 N 0.704
GK14110 Drosophila willistoni FBgn0216116 N 0.704
GL13631 Drosophila persimilis FBgn0151236 N 0.704
GM26630 Drosophila sechellia FBgn0181483 N 0.704
LOC100064922 Equus caballus ENSECAG00000018978 N 0.915
LOC100064953 Equus caballus ENSECAG00000018659 N 0.915
LOC100068259 Equus caballus ENSECAG00000011267 N 0.732
LOC787645 Bos taurus ENSBTAG00000035584 N 0.887
nasonia_NCBI_hmm598374 Nasonia vitripennis nasonia_NCBI_hmm598374 N 0.761
PHUM451590 Pediculus humanus PHUM451590 N 0.718
Q498L2 Xenopus laevis Q498L2 N 0.746
Safb Mus musculus ENSMUSG00000071054 N 0.901
SAFB Ochotona princeps ENSOPRG00000011561 N 0.887
SAFB Oryzias latipes ENSORLG00000016989 N 0.944
SAFB Dasypus novemcinctus ENSDNOG00000015746 N 0.901
SAFB Oryctolagus cuniculus ENSOCUG00000014628 N 0.901
SAFB Gorilla gorilla ENSGGOG00000015109 N 0.901
SAFB Tarsius syrichta ENSTSYG00000001851 N 0.901
SAFB Cavia porcellus ENSCPOG00000026322 N 0.944
safb Danio rerio ENSDARG00000020467 N 0.930
SAFB Sorex araneus ENSSARG00000010475 N 0.901
SAFB Pteropus vampyrus ENSPVAG00000004913 N 0.901
SAFB Pan troglodytes ENSPTRG00000010335 N 0.887
SAFB Tursiops truncatus ENSTTRG00000013588 N 0.901
Safb Dipodomys ordii ENSDORG00000016200 N 0.901
SAFB Callithrix jacchus ENSCJAG00000017081 N 0.901
SAFB Macaca mulatta ENSMMUG00000017970 N 0.901
SAFB Vicugna pacos ENSVPAG00000012043 N 0.901
SAFB Loxodonta africana ENSLAFG00000003840 N 0.887
SAFB Gasterosteus aculeatus ENSGACG00000011385 N 0.958
SAFB Felis catus ENSFCAG00000011835 N 0.901
SAFB Microcebus murinus ENSMICG00000008739 N 0.901
SAFB Canis familiaris ENSCAFG00000018803 N 0.901
SAFB Myotis lucifugus ENSMLUG00000001081 N 0.901
SAFB Echinops telfairi ENSETEG00000018679 N 0.915
SAFB Homo sapiens ENSG00000160633 N 0.901
SAFB-1 Taeniopygia guttata ENSTGUG00000000489 N 0.915
SAFB-2 Taeniopygia guttata ENSTGUG00000000502 N 0.873
SAFB2 Cavia porcellus ENSCPOG00000011394 N 0.930
SAFB2 Sorex araneus ENSSARG00000000649 N 0.930
SAFB2 Macropus eugenii ENSMEUG00000002456 N 0.873
SAFB2 Bos taurus ENSBTAG00000001790 N 0.915
SAFB2 Tursiops truncatus ENSTTRG00000013585 N 0.915
SAFB2 Homo sapiens ENSG00000130254 N 0.915
SAFB2 Echinops telfairi ENSETEG00000016756 N 0.901
SAFB2 Spermophilus tridecemlineatus ENSSTOG00000002758 N 0.915
SAFB2 Myotis lucifugus ENSMLUG00000001050 N 0.901
SAFB2 Felis catus ENSFCAG00000011834 N 0.901
SAFB2 Gallus gallus ENSGALG00000001948 N 0.915
Safb2 Dipodomys ordii ENSDORG00000016199 N 0.859
SAFB2 Canis familiaris ENSCAFG00000018814 N 0.901
SAFB2 Otolemur garnettii ENSOGAG00000006855 N 0.915
SAFB2 Monodelphis domestica ENSMODG00000001178 N 0.901
Safb2 Mus musculus ENSMUSG00000042625 N 0.859
SAFB2 Macaca mulatta ENSMMUG00000017968 N 0.915
SAFB2 Procavia capensis ENSPCAG00000006352 N 0.915
SAFB2 Callithrix jacchus ENSCJAG00000017205 N 0.915
SAFB2 Loxodonta africana ENSLAFG00000003836 N 0.915
SAFB2 Pan troglodytes ENSPTRG00000010334 N 0.915
SAFB2 Gorilla gorilla ENSGGOG00000015093 N 0.915
SAFB2 Gallus gallus ENSGALG00000013365 N 0.873
SAFB2 Oryctolagus cuniculus ENSOCUG00000001592 N 0.901
SLTM Callithrix jacchus ENSCJAG00000020395 N 0.732
SLTM Choloepus hoffmanni ENSCHOG00000001125 N 0.704
sltm Xenopus tropicalis ENSXETG00000010840 N 0.746
SLTM Bos taurus ENSBTAG00000011319 N 0.732
SLTM Anolis carolinensis ENSACAG00000015120 N 0.718
SLTM Vicugna pacos ENSVPAG00000008606 N 0.732
SLTM Ornithorhynchus anatinus ENSOANG00000012311 N 0.746
Sltm Mus musculus ENSMUSG00000032212 N 0.718
SLTM Canis familiaris ENSCAFG00000016586 N 0.732
SLTM Macaca mulatta ENSMMUG00000022200 N 0.732
SLTM Microcebus murinus ENSMICG00000013069 N 0.718
SLTM Meleagris gallopavo ENSMGAG00000005313 N 0.761
SLTM Loxodonta africana ENSLAFG00000017922 N 0.732
SLTM Homo sapiens ENSG00000137776 N 0.732
SLTM Felis catus ENSFCAG00000004826 N 0.718
SLTM Echinops telfairi ENSETEG00000008003 N 0.746
SLTM Oryctolagus cuniculus ENSOCUG00000003327 N 0.732
SLTM Otolemur garnettii ENSOGAG00000011297 N 0.732
SLTM Oryzias latipes ENSORLG00000008161 N 0.704
SLTM Tursiops truncatus ENSTTRG00000005246 N 0.732
SLTM Cavia porcellus ENSCPOG00000026109 N 0.718
SLTM Taeniopygia guttata ENSTGUG00000006017 N 0.761
SLTM Tupaia belangeri ENSTBEG00000000945 N 0.732
SLTM Dasypus novemcinctus ENSDNOG00000002975 N 0.732
Sltm Rattus norvegicus ENSRNOG00000013708 N 0.732
SLTM Pteropus vampyrus ENSPVAG00000015056 N 0.732
SLTM Pan troglodytes ENSPTRG00000007121 N 0.732
SLTM Gallus gallus ENSGALG00000004192 N 0.761
Sltm Dipodomys ordii ENSDORG00000007463 N 0.746
SLTM Erinaceus europaeus ENSEEUG00000000580 N 0.718
XM_001377567.1 Monodelphis domestica ENSMODG00000008794 N 0.746