A9PE83_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s02090 T45407_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s02090.1 RRM 6 71

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29682.m000595 Ricinus communis 29682.m000595 N 0.864
30073.m002271 Ricinus communis 30073.m002271 N 0.836
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.765
AT5G46870 Arabidopsis thaliana AT5G46870-TAIR-G N 0.746
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.910
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 0.783
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.761
BRADI1G10760 Brachypodium distachyon BRADI1G10760 N 0.739
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.776
cassava25244.valid.m1 Manihot esculenta cassava25244.valid.m1 N 0.838
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.851
Cucsa.174100 Cucumis sativus Cucsa.174100 N 0.701
Cucsa.318780 Cucumis sativus Cucsa.318780 N 0.701
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.824
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.768
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.768
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.746
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.776
GRMZM2G114789 Zea mays GRMZM2G114789 N 0.776
GRMZM2G127559 Zea mays GRMZM2G127559 N 0.739
GSVIVG00011624001 Vitis vinifera GSVIVG00011624001 N 0.746
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.851
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.851
LOC_Os03g50560 Oryza sativa LOC_Os03g50560 N 0.783
LOC_Os04g50790 Oryza sativa LOC_Os04g50790 N 0.701
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.761
MDP0000177505 Malus x domestica MDP0000177505 N 0.776
MDP0000243576 Malus x domestica MDP0000243576 N 0.742
MDP0000596287 Malus x domestica MDP0000596287 N 0.836
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.833
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.851
mgf007506m Mimulus guttatus mgf007506m N 0.833
mgf014593m Mimulus guttatus mgf014593m N 0.776
PDK_20s1330821g002 Phoenix dactylifera PDK_20s1330821g002 N 0.727
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.776
PDK_20s1373891g001 Phoenix dactylifera PDK_20s1373891g001 N 0.754
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.821
PK05006.1 Cannabis sativa PK05006.1 N 0.896
ppa021083m Prunus persica ppa021083m N 0.721
ppa024222m Prunus persica ppa024222m N 0.746
SB01G010170 Sorghum bicolor Sb01g010170 N 0.739
SB10G000940 Sorghum bicolor Sb10g000940 N 0.761
XM_002865109.1 Arabidopsis lyrata Al_scaffold_0008_128 N 0.746
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.765