cassava30233.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava30233.valid.m1 T49280_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30233.valid.m1 RRM 157 227
cassava30233.valid.m1 RRM 251 321

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.824
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.803
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.725
BRADI3G42700 Brachypodium distachyon BRADI3G42700 N 0.704
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.817
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.824
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.739
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.831
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.859
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.725
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.824
MDP0000218595 Malus x domestica MDP0000218595 N 0.810
MDP0000528470 Malus x domestica MDP0000528470 N 0.782
MDP0000919119 Malus x domestica MDP0000919119 N 0.810
mgf001484m Mimulus guttatus mgf001484m N 0.810
PK05280.1 Cannabis sativa PK05280.1 N 0.852
ppa008913m Prunus persica ppa008913m N 0.824
ppa009286m Prunus persica ppa009286m N 0.838
SB02G011330 Sorghum bicolor Sb02g011330 N 0.831
SB07G024400 Sorghum bicolor Sb07g024400 N 0.718