PK05280.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK05280.1 T31642_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK05280.1 RRM 11 81
PK05280.1 RRM 104 174

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa008913m Prunus persica ppa008913m N 0.887
MDP0000218595 Malus x domestica MDP0000218595 N 0.880
MDP0000919119 Malus x domestica MDP0000919119 N 0.859
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.852
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.852
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.852
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.845
30147.m013835 Ricinus communis 30147.m013835 N 0.838
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.831
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.831
MDP0000528470 Malus x domestica MDP0000528470 N 0.831
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.831
mgf008267m Mimulus guttatus mgf008267m N 0.824
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.824
mgf001484m Mimulus guttatus mgf001484m N 0.824
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.817
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.817
SB02G011330 Sorghum bicolor Sb02g011330 N 0.817
ppa009286m Prunus persica ppa009286m N 0.810
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.810
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.810
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.810
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.803
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.789
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.789
Glyma05g02800.1 Glycine max Glyma05g02800.1 N 0.789
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.789
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.782
PK28733.1 Cannabis sativa PK28733.1 N 0.782
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.775
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.768
MDP0000299693 Malus x domestica MDP0000299693 N 0.761
MDP0000296631 Malus x domestica MDP0000296631 N 0.761
SB07G024400 Sorghum bicolor Sb07g024400 N 0.761
mgf009747m Mimulus guttatus mgf009747m N 0.754
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.746
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.746
BRADI3G42700 Brachypodium distachyon BRADI3G42700 N 0.746
GRMZM2G158462 Zea mays GRMZM2G158462 N 0.739
MDP0000224531 Malus x domestica MDP0000224531 N 0.718
chr4.CM0173.30.nd Lotus japonicus chr4.CM0173.30.nd N 0.704