A9PG08_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s35830 T45440_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s35830.1 RRM 100 170
POPTR_0001s35830.1 RRM 193 263

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.866
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.845
PK05280.1 Cannabis sativa PK05280.1 N 0.845
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.838
MDP0000218595 Malus x domestica MDP0000218595 N 0.824
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.824
ppa008913m Prunus persica ppa008913m N 0.824
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.810
MDP0000919119 Malus x domestica MDP0000919119 N 0.810
30147.m013835 Ricinus communis 30147.m013835 N 0.810
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.810
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.803
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.803
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.803
SB02G011330 Sorghum bicolor Sb02g011330 N 0.803
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.796
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.796
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.796
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.789
ppa009286m Prunus persica ppa009286m N 0.789
MDP0000528470 Malus x domestica MDP0000528470 N 0.789
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.789
Glyma05g02800.1 Glycine max Glyma05g02800.1 N 0.789
mgf001484m Mimulus guttatus mgf001484m N 0.782
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.775
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.775
mgf008267m Mimulus guttatus mgf008267m N 0.768
SB07G024400 Sorghum bicolor Sb07g024400 N 0.768
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.768
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.768
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.761
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.761
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.761
GRMZM2G158462 Zea mays GRMZM2G158462 N 0.754
BRADI3G42700 Brachypodium distachyon BRADI3G42700 N 0.754
mgf009747m Mimulus guttatus mgf009747m N 0.732
MDP0000296631 Malus x domestica MDP0000296631 N 0.732
MDP0000299693 Malus x domestica MDP0000299693 N 0.732
PK28733.1 Cannabis sativa PK28733.1 N 0.725
chr4.CM0173.30.nd Lotus japonicus chr4.CM0173.30.nd N 0.711