cassava30233.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava30233.valid.m1 T49280_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava30233.valid.m1 RRM 157 227
cassava30233.valid.m1 RRM 251 321

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.944
30147.m013835 Ricinus communis 30147.m013835 N 0.901
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.894
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.866
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.859
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.859
PK05280.1 Cannabis sativa PK05280.1 N 0.852
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.845
ppa009286m Prunus persica ppa009286m N 0.838
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.838
SB02G011330 Sorghum bicolor Sb02g011330 N 0.831
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.831
mgf008267m Mimulus guttatus mgf008267m N 0.824
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.824
ppa008913m Prunus persica ppa008913m N 0.824
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.824
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.824
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.824
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.817
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.817
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.810
MDP0000919119 Malus x domestica MDP0000919119 N 0.810
MDP0000218595 Malus x domestica MDP0000218595 N 0.810
Glyma05g02800.1 Glycine max Glyma05g02800.1 N 0.810
mgf001484m Mimulus guttatus mgf001484m N 0.810
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.803
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.803
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.796
PK28733.1 Cannabis sativa PK28733.1 N 0.782
MDP0000528470 Malus x domestica MDP0000528470 N 0.782
MDP0000299693 Malus x domestica MDP0000299693 N 0.768
MDP0000296631 Malus x domestica MDP0000296631 N 0.768
mgf009747m Mimulus guttatus mgf009747m N 0.754
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.739
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.725
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.725
MDP0000224531 Malus x domestica MDP0000224531 N 0.718
SB07G024400 Sorghum bicolor Sb07g024400 N 0.718
BRADI3G42700 Brachypodium distachyon BRADI3G42700 N 0.704