GSVIVG00007596001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00007596001 T44622_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00007596001 RRM 129 199
GSVIVT00007596001 RRM 223 293

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m013835 Ricinus communis 30147.m013835 N 0.845
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.838
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.838
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.831
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.817
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.817
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.817
ppa008913m Prunus persica ppa008913m N 0.810
SB02G011330 Sorghum bicolor Sb02g011330 N 0.810
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.810
ppa009286m Prunus persica ppa009286m N 0.803
PK05280.1 Cannabis sativa PK05280.1 N 0.803
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.803
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.803
MDP0000218595 Malus x domestica MDP0000218595 N 0.803
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.796
MDP0000919119 Malus x domestica MDP0000919119 N 0.796
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.789
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.789
mgf001484m Mimulus guttatus mgf001484m N 0.789
mgf008267m Mimulus guttatus mgf008267m N 0.782
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.782
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.782
MDP0000528470 Malus x domestica MDP0000528470 N 0.775
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.775
Glyma05g02800.1 Glycine max Glyma05g02800.1 N 0.775
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.768
PK28733.1 Cannabis sativa PK28733.1 N 0.761
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.761
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.754
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.739
MDP0000299693 Malus x domestica MDP0000299693 N 0.732
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.732
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.732
SB07G024400 Sorghum bicolor Sb07g024400 N 0.732
MDP0000296631 Malus x domestica MDP0000296631 N 0.732
BRADI3G42700 Brachypodium distachyon BRADI3G42700 N 0.725
mgf009747m Mimulus guttatus mgf009747m N 0.725
GRMZM2G158462 Zea mays GRMZM2G158462 N 0.711
chr4.CM0173.30.nd Lotus japonicus chr4.CM0173.30.nd N 0.711