estExt_fgenesh2_pm.C_730008 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pm.C_730008 T50949_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pm.C_730008 RRM 28 96
estExt_fgenesh2_pm.C_730008 RRM 253 323

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
90208 Helobdella robusta 90208 I 0.723
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.707
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.707
AAEL000695 Aedes aegypti AAEL000695 I 0.764
AAEL014033 Aedes aegypti AAEL014033 I 0.714
AGAP004950 Anopheles gambiae AGAP004950 I 0.714
AGAP009477 Anopheles gambiae AGAP009477 N 0.732
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.721
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.771
bru-3 Drosophila melanogaster FBgn0262350 D 0.721
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.707
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.857
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.857
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.700
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.721
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.714
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.721
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.714
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.707
CELF6 Oryzias latipes ENSORLG00000013392 I 0.714
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.707
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.779
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.779
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.793
GA25731-RA Drosophila pseudoobscura FBgn0247108 N 0.757
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.721
GD12651 Drosophila simulans FBgn0184378 I 0.721
GE18585 Drosophila yakuba FBgn0235992 N 0.757
GE20053 Drosophila yakuba FBgn0237378 I 0.721
GF10965 Drosophila ananassae FBgn0088005 I 0.721
GG13757 Drosophila erecta FBgn0106020 I 0.721
GH14684 Drosophila grimshawi FBgn0122160 I 0.721
GI13095 Drosophila mojavensis FBgn0135852 I 0.721
GJ13842 Drosophila virilis FBgn0201061 I 0.721
GK17101 Drosophila willistoni FBgn0219100 I 0.721
GL18622 Drosophila persimilis FBgn0156223 N 0.723
GL21647 Drosophila persimilis FBgn0159240 I 0.707
GM24582 Drosophila sechellia FBgn0179445 I 0.721
LOAG_05508 Loa loa LOAG_05508 I 0.736
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.857
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.721
PHUM315130 Pediculus humanus PHUM315130 I 0.721
PHUM533900 Pediculus humanus PHUM533900 N 0.736
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.857
Smp_041280 Schistosoma mansoni Smp_041280 I 0.736
Smp_131780 Schistosoma mansoni Smp_131780 I 0.707