CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF5
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000012870
T37501_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.857
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000017005
RRM
4
72
LFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHTEAQSAISALHGSQTMPGAS
ENSGACP00000017005
RRM
294
364
LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFVFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
61 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF5
Tetraodon nigroviridis
ENSTNIG00000010634
I
0.993
CELF5
Takifugu rubripes
ENSTRUG00000017937
I
0.993
CELF5
Monodelphis domestica
ENSMODG00000019151
I
0.900
CELF5
Anolis carolinensis
ENSACAG00000016959
I
0.900
CELF5
Callithrix jacchus
ENSCJAG00000014799
I
0.893
CELF5
Cavia porcellus
ENSCPOG00000005740
I
0.893
CELF5
Gorilla gorilla
ENSGGOG00000002078
I
0.887
BRUNOL4
Taeniopygia guttata
ENSTGUG00000001649
I
0.886
A5A2G2_CHICK
Gallus gallus
ENSGALG00000002413
I
0.886
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.879
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.871
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.864
AAEL014033
Aedes aegypti
AAEL014033
I
0.864
PHUM315130
Pediculus humanus
PHUM315130
I
0.864
AGAP004950
Anopheles gambiae
AGAP004950
I
0.864
GG13757
Drosophila erecta
FBgn0106020
I
0.857
GF10965
Drosophila ananassae
FBgn0088005
I
0.857
bru-3
Drosophila melanogaster
FBgn0262350
D
0.857
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.857
GE20053
Drosophila yakuba
FBgn0237378
I
0.857
GK17101
Drosophila willistoni
FBgn0219100
I
0.857
GD12651
Drosophila simulans
FBgn0184378
I
0.857
CELF6
Gasterosteus aculeatus
ENSGACG00000016626
I
0.857
GM24582
Drosophila sechellia
FBgn0179445
I
0.857
CELF6
Oryzias latipes
ENSORLG00000013392
I
0.857
A5A2G4_CHICK
Gallus gallus
ENSGALG00000001966
I
0.857
CELF5
Ochotona princeps
ENSOPRG00000007881
I
0.850
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.850
GJ13842
Drosophila virilis
FBgn0201061
I
0.850
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.850
GI13095
Drosophila mojavensis
FBgn0135852
I
0.850
GH14684
Drosophila grimshawi
FBgn0122160
I
0.850
GL21647
Drosophila persimilis
FBgn0159240
I
0.843
nasonia_NCBI_hmm496514
Nasonia vitripennis
nasonia_NCBI_hmm496514
I
0.836
Smp_041280
Schistosoma mansoni
Smp_041280
I
0.829
amel4_ncbi_hmm7761
Apis mellifera
amel4_ncbi_hmm7761
I
0.829
ENSGGOG00000023049
Gorilla gorilla
ENSGGOG00000023049
I
0.807
Celf6
Mus musculus
ENSMUSG00000032297
I
0.807
LOAG_05508
Loa loa
LOAG_05508
I
0.807
CELF6
Ochotona princeps
ENSOPRG00000019169
I
0.807
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.800
LOC100414308
Callithrix jacchus
ENSCJAG00000018355
I
0.800
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.800
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.800
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.800
Sjc_0024790
Schistosoma japonicum
Sjc_0024790
I
0.786
Smp_131780
Schistosoma mansoni
Smp_131780
I
0.779
62054
Helobdella robusta
62054
I
0.750
estExt_fgenesh2_pg.C_sca_1310025
Lottia gigantea
estExt_fgenesh2_pg.C_sca_1310025
I
0.750
90208
Helobdella robusta
90208
I
0.745
CJA07020
Caenorhabditis japonica
CJA07020
I
0.743
CELF3
Tupaia belangeri
ENSTBEG00000010130
I
0.729
CELF5
Macaca mulatta
ENSMMUG00000015513
I
0.729
ENSFCAG00000007908
Felis catus
ENSFCAG00000007908
N
0.714
estExt_fgenesh2_pm.C_730008
Branchiostoma floridae
estExt_fgenesh2_pm.C_730008
I
0.714
CELF5
Felis catus
ENSFCAG00000007127
N
0.700
CELF2
Ornithorhynchus anatinus
ENSOANG00000015432
I
0.700
Q2KI16_BOVIN
Bos taurus
ENSBTAG00000008937
I
0.700
BGIBMGA010431
Bombyx mori
BGIBMGA010431
I
0.700
CELF2
Gorilla gorilla
ENSGGOG00000009330
I
0.700
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.700