CELF5 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000017937 T42384_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.864
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000045983 RRM 5 73
ENSTRUP00000045983 RRM 301 371
ENSTRUP00000045984 RRM 5 73
ENSTRUP00000045984 RRM 299 369
ENSTRUP00000045985 RRM 5 73
ENSTRUP00000045985 RRM 290 360
ENSTRUP00000045986 RRM 5 73
ENSTRUP00000045986 RRM 284 354
ENSTRUP00000045987 RRM 5 73
ENSTRUP00000045987 RRM 283 353
ENSTRUP00000045988 RRM 5 73
ENSTRUP00000045988 RRM 275 345
ENSTRUP00000045989 RRM 4 72
ENSTRUP00000045989 RRM 276 346
ENSTRUP00000045990 RRM 13 59
ENSTRUP00000045990 RRM 261 331

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 1.000
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.993
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.907
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.907
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.900
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.900
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.894
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.893
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.893
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.886
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.879
AGAP004950 Anopheles gambiae AGAP004950 I 0.871
AAEL014033 Aedes aegypti AAEL014033 I 0.871
PHUM315130 Pediculus humanus PHUM315130 I 0.871
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.871
GG13757 Drosophila erecta FBgn0106020 I 0.864
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.864
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.864
CELF6 Oryzias latipes ENSORLG00000013392 I 0.864
GE20053 Drosophila yakuba FBgn0237378 I 0.864
GK17101 Drosophila willistoni FBgn0219100 I 0.864
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.864
bru-3 Drosophila melanogaster FBgn0262350 D 0.864
GF10965 Drosophila ananassae FBgn0088005 I 0.864
GD12651 Drosophila simulans FBgn0184378 I 0.864
GM24582 Drosophila sechellia FBgn0179445 I 0.864
GH14684 Drosophila grimshawi FBgn0122160 I 0.857
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.857
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.857
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.857
GI13095 Drosophila mojavensis FBgn0135852 I 0.857
GJ13842 Drosophila virilis FBgn0201061 I 0.857
GL21647 Drosophila persimilis FBgn0159240 I 0.850
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.843
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.836
Smp_041280 Schistosoma mansoni Smp_041280 I 0.836
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.814
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.814
Celf6 Mus musculus ENSMUSG00000032297 I 0.814
LOAG_05508 Loa loa LOAG_05508 I 0.814
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.807
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.807
HEXA Macaca mulatta ENSMMUG00000010687 I 0.807
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.807
BRUNOL6 Homo sapiens ENSG00000140488 D 0.807
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.793
Smp_131780 Schistosoma mansoni Smp_131780 I 0.786
CELF5 Microcebus murinus ENSMICG00000003506 N 0.773
62054 Helobdella robusta 62054 I 0.757
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.757
90208 Helobdella robusta 90208 I 0.752
CJA07020 Caenorhabditis japonica CJA07020 I 0.750
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.736
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.736
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.721
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.721
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.720
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.707
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.707
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.707
BGIBMGA010431 Bombyx mori BGIBMGA010431 I 0.707
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.707
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.700
CpipJ_CPIJ016329 Culex pipiens CpipJ_CPIJ016329 I 0.700
CELF5 Felis catus ENSFCAG00000007127 N 0.700
CPIJ016329 Culex quinquefasciatus CPIJ016329 I 0.700