CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_sca_90322
(
Lottia gigantea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_sca_90322
T51333_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_sca_90322
RRM
40
108
VFCMQLSARIRPRDLEEFFSSVGKVRDVRLITDNKTRRSKGIAYIEFQQADSVPLAIGLSGQKLLGVPI
estExt_Genewise1.C_sca_90322
RRM
137
207
LYVGSLHYNITEEMLRGIFSPFGKIDDIKLIKDHESGRSQGYGFVTFPEAEDAKKAYEQLNGFELAGRPMK
estExt_Genewise1.C_sca_90322
RRM
321
378
EIRDDVIEECSKHGGVLHIFVDKASRQGNVYVKNPTIAAAVASVNALHGRYFAGRIIT
Links
Other
RRM
family RBPs
Other
Lottia gigantea
RBPs
63 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_13674
Botrytis cinerea
BC1G_13674
N
0.000
CHGG_02847
Chaetomium globosum
CHGG_02847
N
0.000
estExt_fgenesh1_pm.C_190049
Neurospora tetrasperma
estExt_fgenesh1_pm.C_190049
N
0.000
estExt_Genewise1.C_51123
Trichoderma virens
estExt_Genewise1.C_51123
N
0.000
estExt_Genewise1Plus.C_21572
Neurospora discreta
estExt_Genewise1Plus.C_21572
N
0.000
e_gw1.12.283.1
Trichoderma reesei
e_gw1.12.283.1
N
0.000
fgenesh2_pm.1_#_1569
Thielavia terrestris
fgenesh2_pm.1_#_1569
N
0.000
FGSG_01220
Fusarium graminearum
FGSG_01220
N
0.000
FOXG_00169
Fusarium oxysporum
FOXG_00169
N
0.000
FVEG_01347
Fusarium verticillioides
FVEG_01347
N
0.000
GLRG_01598
Colletotrichum graminicola
GLRG_01598
N
0.000
gw1.2.3184.1
Myceliophthora thermophila
gw1.2.3184.1
N
0.000
NCU02661
Neurospora crassa
NCU02661
N
0.000
SS1G_07770
Sclerotinia sclerotiorum
SS1G_07770
N
0.000
VDAG_04392
Verticillium dahliae
VDAG_04392
N
0.000
VDBG_04852
Verticillium albo atrum
VDBG_04852
N
0.000