fgenesh1_pm.C_scaffold_151000005 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_151000005 T52068_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_151000005 RRM 26 96

Links

Other RRM family RBPs
Other Capitella teleta RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
168846 Helobdella robusta 168846 N 0.803
A7E314_BOVIN Bos taurus ENSBTAG00000035585 N 0.817
AAEL001352 Aedes aegypti AAEL001352 N 0.746
AGAP001298 Anopheles gambiae AGAP001298 N 0.718
amel4_ncbi_hmm13354 Apis mellifera amel4_ncbi_hmm13354 N 0.817
Ame_R015170 Ailuropoda melanoleuca Ame_R015170 N 0.704
Ame_R016388 Ailuropoda melanoleuca Ame_R016388 N 0.873
Ame_R016389 Ailuropoda melanoleuca Ame_R016389 N 0.817
CG6995 Drosophila melanogaster FBgn0039229 N 0.718
CPIJ012814 Culex quinquefasciatus CPIJ012814 N 0.732
CpipJ_CPIJ012814 Culex pipiens CpipJ_CPIJ012814 N 0.732
DGIL_AUG5s7140g4t1 Acyrtosiphon pisum DGIL_AUG5s7140g4t1 N 0.718
DGIL_AUG5s8592g2t1 Acyrtosiphon pisum DGIL_AUG5s8592g2t1 N 0.704
ENSACAG00000016893 Anolis carolinensis ENSACAG00000016893 N 0.859
ENSACAG00000016928 Anolis carolinensis ENSACAG00000016928 N 0.789
ENSBTAG00000007875 Bos taurus ENSBTAG00000007875 N 0.817
ENSMGAG00000001051 Meleagris gallopavo ENSMGAG00000001051 N 0.859
ENSMGAG00000001101 Meleagris gallopavo ENSMGAG00000001101 N 0.789
ENSMODG00000001236 Monodelphis domestica ENSMODG00000001236 N 0.803
ENSOANG00000013644 Ornithorhynchus anatinus ENSOANG00000013644 N 0.859
ENSPPYG00000006515 Pongo pygmaeus ENSPPYG00000006515 N 0.704
ENSPPYG00000009427 Pongo pygmaeus ENSPPYG00000009427 N 0.873
ENSPPYG00000009428 Pongo pygmaeus ENSPPYG00000009428 N 0.817
ENSSSCG00000013523 Sus scrofa ENSSSCG00000013523 N 0.873
ENSTNIG00000015470 Tetraodon nigroviridis ENSTNIG00000015470 N 0.859
estExt_fgenesh1_pg.C_1060073 Nematostella vectensis estExt_fgenesh1_pg.C_1060073 N 0.704
estExt_fgenesh2_pg.C_3630023 Branchiostoma floridae estExt_fgenesh2_pg.C_3630023 N 0.817
estExt_fgenesh2_pg.C_4200008 Branchiostoma floridae estExt_fgenesh2_pg.C_4200008 N 0.817
estExt_fgenesh2_pg.C_sca_50258 Lottia gigantea estExt_fgenesh2_pg.C_sca_50258 N 0.817
GA26852-RA Drosophila pseudoobscura FBgn0248225 N 0.718
GD21133 Drosophila simulans FBgn0192585 N 0.718
GE23518 Drosophila yakuba FBgn0240697 N 0.718
GF16243 Drosophila ananassae FBgn0093265 N 0.718
GG11323 Drosophila erecta FBgn0103624 N 0.718
GH19115 Drosophila grimshawi FBgn0126582 N 0.718
GI23570 Drosophila mojavensis FBgn0146296 N 0.718
GJ23544 Drosophila virilis FBgn0210641 N 0.718
GK14110 Drosophila willistoni FBgn0216116 N 0.718
GL13631 Drosophila persimilis FBgn0151236 N 0.718
GM26630 Drosophila sechellia FBgn0181483 N 0.718
LOC100064922 Equus caballus ENSECAG00000018978 N 0.873
LOC100064953 Equus caballus ENSECAG00000018659 N 0.817
LOC100068259 Equus caballus ENSECAG00000011267 N 0.704
LOC787645 Bos taurus ENSBTAG00000035584 N 0.803
nasonia_NCBI_hmm598374 Nasonia vitripennis nasonia_NCBI_hmm598374 N 0.775
NCBI_GNO_7700035 Daphnia pulex NCBI_GNO_7700035 N 0.732
PHUM451590 Pediculus humanus PHUM451590 N 0.746
SAFB Pteropus vampyrus ENSPVAG00000004913 N 0.817
SAFB Sorex araneus ENSSARG00000010475 N 0.817
SAFB Pan troglodytes ENSPTRG00000010335 N 0.803
SAFB Gorilla gorilla ENSGGOG00000015109 N 0.817
SAFB Echinops telfairi ENSETEG00000018679 N 0.817
SAFB Oryzias latipes ENSORLG00000016989 N 0.831
SAFB Ochotona princeps ENSOPRG00000011561 N 0.803
SAFB Takifugu rubripes ENSTRUG00000003567 N 0.859
SAFB Tarsius syrichta ENSTSYG00000001851 N 0.817
SAFB Canis familiaris ENSCAFG00000018803 N 0.817
SAFB Callithrix jacchus ENSCJAG00000017081 N 0.817
SAFB Cavia porcellus ENSCPOG00000026322 N 0.845
safb Danio rerio ENSDARG00000020467 N 0.831
SAFB Dasypus novemcinctus ENSDNOG00000015746 N 0.817
Safb Dipodomys ordii ENSDORG00000016200 N 0.817
SAFB Vicugna pacos ENSVPAG00000012043 N 0.817
SAFB Tursiops truncatus ENSTTRG00000013588 N 0.817
SAFB Oryctolagus cuniculus ENSOCUG00000014628 N 0.817
SAFB Gasterosteus aculeatus ENSGACG00000011385 N 0.887
SAFB Felis catus ENSFCAG00000011835 N 0.817
SAFB Myotis lucifugus ENSMLUG00000001081 N 0.817
SAFB Microcebus murinus ENSMICG00000008739 N 0.817
SAFB Macaca mulatta ENSMMUG00000017970 N 0.817
Safb Mus musculus ENSMUSG00000071054 N 0.803
SAFB Homo sapiens ENSG00000160633 N 0.817
SAFB Loxodonta africana ENSLAFG00000003840 N 0.831
SAFB-1 Taeniopygia guttata ENSTGUG00000000489 N 0.859
SAFB-2 Taeniopygia guttata ENSTGUG00000000502 N 0.789
SAFB2 Loxodonta africana ENSLAFG00000003836 N 0.873
SAFB2 Bos taurus ENSBTAG00000001790 N 0.873
SAFB2 Gallus gallus ENSGALG00000001948 N 0.859
SAFB2 Myotis lucifugus ENSMLUG00000001050 N 0.873
SAFB2 Tursiops truncatus ENSTTRG00000013585 N 0.873
SAFB2 Gallus gallus ENSGALG00000013365 N 0.789
SAFB2 Gorilla gorilla ENSGGOG00000015093 N 0.873
SAFB2 Homo sapiens ENSG00000130254 N 0.873
SAFB2 Spermophilus tridecemlineatus ENSSTOG00000002758 N 0.873
Safb2 Dipodomys ordii ENSDORG00000016199 N 0.859
SAFB2 Callithrix jacchus ENSCJAG00000017205 N 0.873
SAFB2 Cavia porcellus ENSCPOG00000011394 N 0.859
SAFB2 Macropus eugenii ENSMEUG00000002456 N 0.845
SAFB2 Monodelphis domestica ENSMODG00000001178 N 0.873
Safb2 Mus musculus ENSMUSG00000042625 N 0.887
SAFB2 Otolemur garnettii ENSOGAG00000006855 N 0.873
SAFB2 Canis familiaris ENSCAFG00000018814 N 0.859
SAFB2 Echinops telfairi ENSETEG00000016756 N 0.873
SAFB2 Procavia capensis ENSPCAG00000006352 N 0.859
SAFB2 Sorex araneus ENSSARG00000000649 N 0.859
SAFB2 Macaca mulatta ENSMMUG00000017968 N 0.873
SAFB2 Oryctolagus cuniculus ENSOCUG00000001592 N 0.859
SAFB2 Felis catus ENSFCAG00000011834 N 0.859
SAFB2 Pan troglodytes ENSPTRG00000010334 N 0.873
SLTM Callithrix jacchus ENSCJAG00000020395 N 0.718
SLTM Homo sapiens ENSG00000137776 N 0.704
SLTM Macaca mulatta ENSMMUG00000022200 N 0.704
SLTM Ornithorhynchus anatinus ENSOANG00000012311 N 0.704
SLTM Gallus gallus ENSGALG00000004192 N 0.718
SLTM Bos taurus ENSBTAG00000011319 N 0.704
SLTM Oryctolagus cuniculus ENSOCUG00000003327 N 0.704
SLTM Tupaia belangeri ENSTBEG00000000945 N 0.704
SLTM Loxodonta africana ENSLAFG00000017922 N 0.704
SLTM Echinops telfairi ENSETEG00000008003 N 0.718
SLTM Otolemur garnettii ENSOGAG00000011297 N 0.704
SLTM Canis familiaris ENSCAFG00000016586 N 0.704
SLTM Tursiops truncatus ENSTTRG00000005246 N 0.704
Sltm Rattus norvegicus ENSRNOG00000013708 N 0.704
SLTM Pteropus vampyrus ENSPVAG00000015056 N 0.704
SLTM Vicugna pacos ENSVPAG00000008606 N 0.704
SLTM Meleagris gallopavo ENSMGAG00000005313 N 0.718
SLTM Pan troglodytes ENSPTRG00000007121 N 0.704
Sltm Dipodomys ordii ENSDORG00000007463 N 0.718
SLTM Dasypus novemcinctus ENSDNOG00000002975 N 0.704
SLTM Taeniopygia guttata ENSTGUG00000006017 N 0.718
XM_001377567.1 Monodelphis domestica ENSMODG00000008794 N 0.704