CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM22
(
Callithrix jacchus
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSCJAG00000020963
T00468_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000039000
CCCH ZF
164
186
HICSFWVKGECKRGEECPYRHEK
ENSCJAP00000039000
RRM
235
300
LYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN
Links
Other
CCCH ZF,RRM
family RBPs
Other
Callithrix jacchus
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PDCD11
Cavia porcellus
ENSCPOG00000010957
N
0.000
Q6X9W2_HORSE
Equus caballus
ENSECAG00000020507
N
0.000
PDCD11
Felis catus
ENSFCAG00000002384
N
0.000
PDCD11
Gorilla gorilla
ENSGGOG00000011621
N
0.000
PDCD11
Homo sapiens
ENSG00000148843
N
0.000
PDCD11
Macaca mulatta
ENSMMUG00000007058
N
0.000
Pdcd11
Mus musculus
ENSMUSG00000025047
N
0.000
PDCD11
Oryctolagus cuniculus
ENSOCUG00000006312
N
0.000
PDCD11
Pan troglodytes
ENSPTRG00000002911
N
0.000
Pdcd11
Rattus norvegicus
ENSRNOG00000020304
N
0.000