CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Rbm22
(
Dipodomys ordii
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSDORG00000005329
T00489_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000004985
CCCH ZF
163
185
HICSFWVKGECKRGEECPYRHEK
ENSDORP00000004985
RRM
234
299
LYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN
Links
Other
CCCH ZF,RRM
family RBPs
Other
Dipodomys ordii
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R006793
Ailuropoda melanoleuca
Ame_R006793
I
0.000
FMR1
Anolis carolinensis
ENSACAG00000007899
N
0.000
Q0II33_BOVIN
Bos taurus
ENSBTAG00000012552
N
0.000
LOC100414871
Callithrix jacchus
ENSCJAG00000003925
I
0.000
FMR1
Canis familiaris
ENSCAFG00000019085
I
0.000
FMR1
Cavia porcellus
ENSCPOG00000003723
N
0.000
FMR1
Dasypus novemcinctus
ENSDNOG00000019486
I
0.000
Fmr1
Dipodomys ordii
ENSDORG00000012501
N
0.000
FMR1
Echinops telfairi
ENSETEG00000006061
I
0.000
FMR1
Felis catus
ENSFCAG00000007228
I
0.000
Q5ZHM3_CHICK
Gallus gallus
ENSGALG00000009177
I
0.000
FMR1
Gorilla gorilla
ENSGGOG00000010373
N
0.000
FMR1
Homo sapiens
ENSG00000102081
D
0.000
FMR1
Loxodonta africana
ENSLAFG00000013592
N
0.000
FMR1
Macaca mulatta
ENSMMUG00000015814
I
0.000
FMR1
Meleagris gallopavo
ENSMGAG00000008270
N
0.000
FMR1
Monodelphis domestica
ENSMODG00000005550
I
0.000
Fmr1
Mus musculus
ENSMUSG00000000838
I
0.000
FMR1
Ochotona princeps
ENSOPRG00000012759
N
0.000
FMR1
Ornithorhynchus anatinus
ENSOANG00000001097
I
0.000
FMR1
Oryctolagus cuniculus
ENSOCUG00000014621
N
0.000
FMR1
Otolemur garnettii
ENSOGAG00000013061
N
0.000
FMR1
Pan troglodytes
ENSPTRG00000022349
I
0.000
ENSPPYG00000020797
Pongo pygmaeus
ENSPPYG00000020797
I
0.000
FMR1
Procavia capensis
ENSPCAG00000011936
N
0.000
FMR1
Pteropus vampyrus
ENSPVAG00000013386
I
0.000
FMR1_RAT
Rattus norvegicus
ENSRNOG00000011900
I
0.000
FMR1
Sorex araneus
ENSSARG00000003475
N
0.000
FMR1
Spermophilus tridecemlineatus
ENSSTOG00000003260
N
0.000
FMR1
Sus scrofa
ENSSSCG00000012727
I
0.000
FMR1
Taeniopygia guttata
ENSTGUG00000004735
I
0.000
FMR1
Tursiops truncatus
ENSTTRG00000000613
I
0.000
FMR1
Vicugna pacos
ENSVPAG00000008700
I
0.000