CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CC1G_07829
(
Coprinopsis cinerea
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CC1G_07829
T01275_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CC1G_07829T0
CCCH ZF
514
539
PKTVLCAFFKAGTCEKGNKCKFSHDI
Links
Other
CCCH ZF
family RBPs
Other
Coprinopsis cinerea
RBPs
122 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.769
Ame_R017931
Ailuropoda melanoleuca
Ame_R017931
N
0.731
AB07703.1
Alternaria brassicicola
AB07703.1
N
0.808
amel4_ncbi_hmm11607
Apis mellifera
amel4_ncbi_hmm11607
N
0.731
XM_002883888.1
Arabidopsis lyrata
fgenesh2_kg.3__3143__AT2G20280.1
N
0.731
AT2G20280
Arabidopsis thaliana
AT2G20280-TAIR-G
N
0.731
ARB_01723
Arthroderma benhamiae
ARB_01723
N
0.808
ACL082W
Ashbya gossypii
ACL082W
N
0.731
fgenesh1_pg.00710_#_148
Aspergillus carbonarius
fgenesh1_pg.00710_#_148
N
0.769
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.808
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.769
ANIA_06922
Aspergillus nidulans
CADANIAG00007728
N
0.769
An14g05330
Aspergillus niger
CADANGAG00011470
N
0.769
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.808
BDBG_01641
Blastomyces dermatitidis
BDBG_01641
N
0.769
ZC3HF_BOVIN
Bos taurus
ENSBTAG00000021762
N
0.731
BC1G_06447
Botrytis cinerea
BC1G_06447
N
0.769
BRADI2G54220
Brachypodium distachyon
BRADI2G54220
N
0.731
estExt_gwp.C_6160004
Branchiostoma floridae
estExt_gwp.C_6160004
N
0.731
ZC3H15
Callithrix jacchus
ENSCJAG00000005931
N
0.731
CAGL0J08679g
Candida glabrata
CAGL0J08679g
N
0.731
PGUG_02031
Candida guilliermondii
PGUG_02031
N
0.769
CPAG_03559
Candida parapsilosis
CPAG_03559
N
0.769
CTRG_02162
Candida tropicalis
CTRG_02162
N
0.731
ZC3H15
Canis familiaris
ENSCAFG00000014494
N
0.731
CAOG_04504
Capsaspora owczarzaki
CAOG_04504
N
0.731
ENSCPOG00000012965
Cavia porcellus
ENSCPOG00000012965
N
0.731
ZC3H15
Choloepus hoffmanni
ENSCHOG00000011958
N
0.731
ENSCING00000006888
Ciona intestinalis
ENSCING00000006888
N
0.731
CIMG_09790
Coccidioides immitis
CIMG_09790
N
0.846
CPSG_09723
Coccidioides posadasii
CPSG_09723
N
0.846
estExt_Genewise1.C_60471
Cochliobolus heterostrophus C5
estExt_Genewise1.C_60471
N
0.808
estExt_Genewise1.C_22051
Cryphonectria parasitica
estExt_Genewise1.C_22051
N
0.769
CNBG_3113
Cryptococcus neoformans
CNBG_3113
N
0.846
zc3h15
Danio rerio
ENSDARG00000015889
N
0.769
PASA_GEN_1200032
Daphnia pulex
PASA_GEN_1200032
N
0.731
Zc3h15
Dipodomys ordii
ENSDORG00000011664
N
0.731
GD10149
Drosophila simulans
FBgn0181924
N
0.769
GK21573
Drosophila willistoni
FBgn0223565
N
0.731
LOC100068634
Equus caballus
ENSECAG00000017149
N
0.731
ZC3H15
Felis catus
ENSFCAG00000008213
N
0.731
ZC3HF_CHICK
Gallus gallus
ENSGALG00000002670
N
0.731
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.769
ZC3H15
Gorilla gorilla
ENSGGOG00000000073
N
0.731
72073
Helobdella robusta
72073
N
0.769
HCAG_08348
Histoplasma capsulatum
HCAG_08348
N
0.769
ZC3H15
Homo sapiens
ENSG00000065548
N
0.731
XP_002158150.1
Hydra magnipapillata
XP_002158150.1
N
0.731
KLLA0C13673g
Kluyveromyces lactis
KLLA0C13673g
N
0.731
KLTH0G08162g
Kluyveromyces thermotolerans
KLTH0G08162g
N
0.731
SAKL0E09966g
Lachancea kluyveri
SAKL0E09966g
N
0.731
ENSLAFG00000001563
Loxodonta africana
ENSLAFG00000001563
N
0.731
ZC3H15
Macaca mulatta
ENSMMUG00000017248
N
0.731
MGG_07010
Magnaporthe oryzae
MGG_07010
N
0.808
e_gw1.19.91.1
Melampsora laricis populina
e_gw1.19.91.1
N
0.846
ZC3H15
Meleagris gallopavo
ENSMGAG00000004447
N
0.731
Minc08580
Meloidogyne incognita
Minc08580
N
0.769
ZC3H15
Microcebus murinus
ENSMICG00000014245
N
0.731
MCYG_02954
Microsporum canis
MCYG_02954
N
0.808
MGYG_00125
Microsporum gypseum
MGYG_00125
N
0.808
ITGAV
Monodelphis domestica
ENSMODG00000010653
N
0.731
estExt_Genewise1.C_30385
Mucor circinelloides
estExt_Genewise1.C_30385
N
0.731
Zc3h15
Mus musculus
ENSMUSG00000027091
N
0.731
estExt_Genewise1Plus.C_31385
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_31385
N
0.808
ZC3H15
Myotis lucifugus
ENSMLUG00000007741
N
0.731
nasonia_NCBI_hmm1144383
Nasonia vitripennis
nasonia_NCBI_hmm1144383
N
0.731
e_gw.53.202.1
Nematostella vectensis
e_gw.53.202.1
N
0.731
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.769
NCU01795
Neurospora crassa
NCU01795
N
0.769
estExt_Genewise1.C_110154
Neurospora discreta
estExt_Genewise1.C_110154
N
0.769
estExt_fgenesh1_pm.C_130118
Neurospora tetrasperma
estExt_fgenesh1_pm.C_130118
N
0.769
ENSOPRG00000015790
Ochotona princeps
ENSOPRG00000015790
N
0.731
ZC3H15
Ornithorhynchus anatinus
ENSOANG00000015742
N
0.731
ENSOCUG00000011903
Oryctolagus cuniculus
ENSOCUG00000011903
N
0.731
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.769
ZC3H15
Otolemur garnettii
ENSOGAG00000002182
N
0.731
ZC3H15
Pan troglodytes
ENSPTRG00000012717
N
0.731
PABG_07629
Paracoccidioides brasiliensis
PABG_07629
N
0.808
PHUM521160
Pediculus humanus
PHUM521160
N
0.731
Pc21g03130
Penicillium chrysogenum
Pc21g03130
N
0.808
PMAA_036360
Penicillium marneffei
PMAA_036360
N
0.731
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.923
PDK_20s1366191g001
Phoenix dactylifera
PDK_20s1366191g001
N
0.731
gw1.1.348.1
Phycomyces blakesleeanus
gw1.1.348.1
N
0.731
estExt_fgenesh1_pm.C_180201
Phytophthora capsici
estExt_fgenesh1_pm.C_180201
N
0.769
fgenesh1_pg.C_scaffold_3139000003
Phytophthora capsici
fgenesh1_pg.C_scaffold_3139000003
N
0.769
PITG_04608
Phytophthora infestans
PITG_04608
N
0.808
s_451242
Phytophthora sojae
s_451242
N
0.808
e_gw1.8.939.1
Pleurotus ostreatus
e_gw1.8.939.1
N
0.885
Pa_3_8730
Podospora anserina
Pa_3_8730
N
0.808
ENSPPYG00000013004
Pongo pygmaeus
ENSPPYG00000013004
N
0.731
B9HM02_POPTR
Populus trichocarpa
POPTR_0008s04540
N
0.731
ZC3H15
Procavia capensis
ENSPCAG00000008499
N
0.731
ZC3H15
Pteropus vampyrus
ENSPVAG00000004828
N
0.731
PGTG_08922
Puccinia graminis
PGTG_08922
N
0.846
PTTG_08784
Puccinia triticina
PTTG_08784
N
0.808
Zc3h15
Rattus norvegicus
ENSRNOG00000005256
N
0.731
29805.m001499
Ricinus communis
29805.m001499
N
0.731
SS1G_13466
Sclerotinia sclerotiorum
SS1G_13466
N
0.769
ZC3H15
Sorex araneus
ENSSARG00000012071
N
0.731
ZC3H15
Spermophilus tridecemlineatus
ENSSTOG00000006873
N
0.731
SPPG_00188
Spizellomyces punctatus
SPPG_00188
N
0.731
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.885
ZC3H15
Sus scrofa
ENSSSCG00000016026
N
0.731
ZC3H15
Taeniopygia guttata
ENSTGUG00000011131
N
0.731
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.769
ZC3H15
Tarsius syrichta
ENSTSYG00000011019
N
0.731
ZC3H15
Tetraodon nigroviridis
ENSTNIG00000009860
N
0.731
TEQG_08385
Trichophyton equinum
TEQG_08385
N
0.808
TERG_01412
Trichophyton rubrum
TERG_01412
N
0.808
TESG_03135
Trichophyton tonsurans
TESG_03135
N
0.808
TRV_03417
Trichophyton verrucosum
TRV_03417
N
0.808
ZC3H15
Tupaia belangeri
ENSTBEG00000015530
N
0.731
ZC3H15
Tursiops truncatus
ENSTTRG00000012425
N
0.731
UREG_04706
Uncinocarpus reesii
UREG_04706
N
0.808
VDBG_05241
Verticillium albo atrum
VDBG_05241
N
0.731
VDAG_08863
Verticillium dahliae
VDAG_08863
N
0.731
ZC3H15
Vicugna pacos
ENSVPAG00000006980
N
0.731
AAH77826
Xenopus laevis
AAH77826
N
0.731
BAD89267
Xenopus laevis
BAD89267
N
0.731
Q6DD06
Xenopus laevis
Q6DD06
N
0.731
GRMZM2G032258
Zea mays
GRMZM2G032258
N
0.731