CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MBNL2
(
Gorilla gorilla
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSGGOG00000008349
T02753_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
0.882
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
0.882
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000008158
CCCH ZF
16
40
LEVCRQFQRGTCSRSDEECKFAHPP
ENSGGOP00000008158
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSGGOP00000008158
CCCH ZF
177
203
DKLEVCREFQRGNCARGETDCRFAHPA
ENSGGOP00000008158
CCCH ZF
215
237
VTVCMDYIKGRCMREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Gorilla gorilla
RBPs
111 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBMS3
Meleagris gallopavo
ENSMGAG00000011129
N
0.000
RBMS3
Oryzias latipes
ENSORLG00000002306
N
0.000
RBMS3
Takifugu rubripes
ENSTRUG00000007482
N
0.000