CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MBNL2
(
Sus scrofa
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSSSCG00000009505
T03378_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
0.882
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
0.882
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000010151
CCCH ZF
16
40
LEVCRQFQRGTCSRSDEECKFAHPP
ENSSSCP00000010151
CCCH ZF
57
72
LKGRCSRENCKYLHPP
ENSSSCP00000010151
CCCH ZF
177
203
DKLEVCREFQRGNCARGETDCRFAHPA
ENSSSCP00000010151
CCCH ZF
215
237
VTVCMDYIKGRCMREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Sus scrofa
RBPs
111 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010018
Aedes aegypti
AAEL010018
N
0.000
AGAP004937
Anopheles gambiae
AGAP004937
N
0.000
GF10107
Drosophila ananassae
FBgn0087148
N
0.000
GG15082
Drosophila erecta
FBgn0107336
N
0.000
GH16406
Drosophila grimshawi
FBgn0123877
N
0.000
Unr
Drosophila melanogaster
FBgn0035895
N
0.000
GI12487
Drosophila mojavensis
FBgn0135244
N
0.000
GM24938
Drosophila sechellia
FBgn0179800
N
0.000
GJ12391
Drosophila virilis
FBgn0199634
N
0.000
GK17751
Drosophila willistoni
FBgn0219750
N
0.000
GE21305
Drosophila yakuba
FBgn0238572
N
0.000