CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R002664
(
Ailuropoda melanoleuca
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Ame_R002664
T05943_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
0.882
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
0.882
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R002664
CCCH ZF
16
40
LEVCRQFQRGTCSRSDEECKFAHPP
Ame_R002664
CCCH ZF
57
72
LKGRCSRENCKYLHPP
Ame_R002664
CCCH ZF
177
203
DKLEVCREFQRGNCARGETDCRFAHPA
Ame_R002664
CCCH ZF
215
237
VTVCMDYIKGRCMREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Ailuropoda melanoleuca
RBPs
111 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os12g26310
Oryza sativa
LOC_Os12g26310
N
0.000
LOC_Os08g31150
Oryza sativa
LOC_Os08g31150
N
0.000
LOC_Os08g19540
Oryza sativa
LOC_Os08g19540
N
0.000
LOC_Os08g14290
Oryza sativa
LOC_Os08g14290
N
0.000
LOC_Os07g37900
Oryza sativa
LOC_Os07g37900
N
0.000
LOC_Os07g33150
Oryza sativa
LOC_Os07g33150
N
0.000
LOC_Os07g28370
Oryza sativa
LOC_Os07g28370
N
0.000
LOC_Os07g15470
Oryza sativa
LOC_Os07g15470
N
0.000
LOC_Os06g28490
Oryza sativa
LOC_Os06g28490
N
0.000
LOC_Os09g02960
Oryza sativa
LOC_Os09g02960
N
0.000
LOC_Os09g04240
Oryza sativa
LOC_Os09g04240
N
0.000
LOC_Os09g07400
Oryza sativa
LOC_Os09g07400
N
0.000
LOC_Os12g24610
Oryza sativa
LOC_Os12g24610
N
0.000
LOC_Os12g13330
Oryza sativa
LOC_Os12g13330
N
0.000
LOC_Os11g20610
Oryza sativa
LOC_Os11g20610
N
0.000
LOC_Os11g19610
Oryza sativa
LOC_Os11g19610
N
0.000
LOC_Os11g09919
Oryza sativa
LOC_Os11g09919
N
0.000
LOC_Os11g02880
Oryza sativa
LOC_Os11g02880
N
0.000
LOC_Os10g21510
Oryza sativa
LOC_Os10g21510
N
0.000
LOC_Os09g14470
Oryza sativa
LOC_Os09g14470
N
0.000
LOC_Os06g25850
Oryza sativa
LOC_Os06g25850
N
0.000
LOC_Os06g25710
Oryza sativa
LOC_Os06g25710
N
0.000
LOC_Os06g25560
Oryza sativa
LOC_Os06g25560
N
0.000
LOC_Os03g31530
Oryza sativa
LOC_Os03g31530
N
0.000
LOC_Os03g29520
Oryza sativa
LOC_Os03g29520
N
0.000
LOC_Os03g16530
Oryza sativa
LOC_Os03g16530
N
0.000
LOC_Os03g15140
Oryza sativa
LOC_Os03g15140
N
0.000
LOC_Os02g36470
Oryza sativa
LOC_Os02g36470
N
0.000
LOC_Os02g25170
Oryza sativa
LOC_Os02g25170
N
0.000
LOC_Os02g24520
Oryza sativa
LOC_Os02g24520
N
0.000
LOC_Os01g51340
Oryza sativa
LOC_Os01g51340
N
0.000
LOC_Os03g33828
Oryza sativa
LOC_Os03g33828
N
0.000
LOC_Os03g37210
Oryza sativa
LOC_Os03g37210
N
0.000
LOC_Os04g30440
Oryza sativa
LOC_Os04g30440
N
0.000
LOC_Os06g22750
Oryza sativa
LOC_Os06g22750
N
0.000
LOC_Os06g17350
Oryza sativa
LOC_Os06g17350
N
0.000
LOC_Os05g26000
Oryza sativa
LOC_Os05g26000
N
0.000
LOC_Os05g24310
Oryza sativa
LOC_Os05g24310
N
0.000
LOC_Os05g24100
Oryza sativa
LOC_Os05g24100
N
0.000
LOC_Os05g20450
Oryza sativa
LOC_Os05g20450
N
0.000
LOC_Os05g19460
Oryza sativa
LOC_Os05g19460
N
0.000
LOC_Os04g48590
Oryza sativa
LOC_Os04g48590
N
0.000
LOC_Os01g24860
Oryza sativa
LOC_Os01g24860
N
0.000