Ame_R002664 (Ailuropoda melanoleuca)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Ame_R002664 T05943_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.882
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.882
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R002664 CCCH ZF 16 40
Ame_R002664 CCCH ZF 57 72
Ame_R002664 CCCH ZF 177 203
Ame_R002664 CCCH ZF 215 237

Links

Other CCCH ZF family RBPs
Other Ailuropoda melanoleuca RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os12g26310 Oryza sativa LOC_Os12g26310 N 0.000
LOC_Os08g31150 Oryza sativa LOC_Os08g31150 N 0.000
LOC_Os08g19540 Oryza sativa LOC_Os08g19540 N 0.000
LOC_Os08g14290 Oryza sativa LOC_Os08g14290 N 0.000
LOC_Os07g37900 Oryza sativa LOC_Os07g37900 N 0.000
LOC_Os07g33150 Oryza sativa LOC_Os07g33150 N 0.000
LOC_Os07g28370 Oryza sativa LOC_Os07g28370 N 0.000
LOC_Os07g15470 Oryza sativa LOC_Os07g15470 N 0.000
LOC_Os06g28490 Oryza sativa LOC_Os06g28490 N 0.000
LOC_Os09g02960 Oryza sativa LOC_Os09g02960 N 0.000
LOC_Os09g04240 Oryza sativa LOC_Os09g04240 N 0.000
LOC_Os09g07400 Oryza sativa LOC_Os09g07400 N 0.000
LOC_Os12g24610 Oryza sativa LOC_Os12g24610 N 0.000
LOC_Os12g13330 Oryza sativa LOC_Os12g13330 N 0.000
LOC_Os11g20610 Oryza sativa LOC_Os11g20610 N 0.000
LOC_Os11g19610 Oryza sativa LOC_Os11g19610 N 0.000
LOC_Os11g09919 Oryza sativa LOC_Os11g09919 N 0.000
LOC_Os11g02880 Oryza sativa LOC_Os11g02880 N 0.000
LOC_Os10g21510 Oryza sativa LOC_Os10g21510 N 0.000
LOC_Os09g14470 Oryza sativa LOC_Os09g14470 N 0.000
LOC_Os06g25850 Oryza sativa LOC_Os06g25850 N 0.000
LOC_Os06g25710 Oryza sativa LOC_Os06g25710 N 0.000
LOC_Os06g25560 Oryza sativa LOC_Os06g25560 N 0.000
LOC_Os03g31530 Oryza sativa LOC_Os03g31530 N 0.000
LOC_Os03g29520 Oryza sativa LOC_Os03g29520 N 0.000
LOC_Os03g16530 Oryza sativa LOC_Os03g16530 N 0.000
LOC_Os03g15140 Oryza sativa LOC_Os03g15140 N 0.000
LOC_Os02g36470 Oryza sativa LOC_Os02g36470 N 0.000
LOC_Os02g25170 Oryza sativa LOC_Os02g25170 N 0.000
LOC_Os02g24520 Oryza sativa LOC_Os02g24520 N 0.000
LOC_Os01g51340 Oryza sativa LOC_Os01g51340 N 0.000
LOC_Os03g33828 Oryza sativa LOC_Os03g33828 N 0.000
LOC_Os03g37210 Oryza sativa LOC_Os03g37210 N 0.000
LOC_Os04g30440 Oryza sativa LOC_Os04g30440 N 0.000
LOC_Os06g22750 Oryza sativa LOC_Os06g22750 N 0.000
LOC_Os06g17350 Oryza sativa LOC_Os06g17350 N 0.000
LOC_Os05g26000 Oryza sativa LOC_Os05g26000 N 0.000
LOC_Os05g24310 Oryza sativa LOC_Os05g24310 N 0.000
LOC_Os05g24100 Oryza sativa LOC_Os05g24100 N 0.000
LOC_Os05g20450 Oryza sativa LOC_Os05g20450 N 0.000
LOC_Os05g19460 Oryza sativa LOC_Os05g19460 N 0.000
LOC_Os04g48590 Oryza sativa LOC_Os04g48590 N 0.000
LOC_Os01g24860 Oryza sativa LOC_Os01g24860 N 0.000