CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os05g18230
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os05g18230
T11434_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g18230.1
CCHC ZF
590
607
RLCFNCFEPGHFADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
599 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CMU_010160
Cryptosporidium muris
CMU_010160
N
0.000
cassava42201.valid.m1
Manihot esculenta
cassava42201.valid.m1
N
0.000
cassava42200.valid.m1
Manihot esculenta
cassava42200.valid.m1
N
0.000
cassava34306.m1
Manihot esculenta
cassava34306.m1
N
0.000
BGIOSIBCE028949
Oryza indica
BGIOSIBCE028949
N
0.000
LOC_Os09g01640
Oryza sativa
LOC_Os09g01640
N
0.000
B9MTX0_POPTR
Populus trichocarpa
POPTR_0001s03100
N
0.000
29977.m000253
Ricinus communis
29977.m000253
N
0.000
TGME49_044840
Toxoplasma gondii
TGME49_044840
N
0.000
TGVEG_104640
Toxoplasma gondii
TGVEG_104640
N
0.000