fgenesh1_pg.C_scaffold_231000002 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_231000002 T13868_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_231000002 CCHC ZF 513 530

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.000
e_gw1.4.1867.1 Agaricus bisporus e_gw1.4.1867.1 N 0.000
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.000
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.000
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.000
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.000
PABPN1L Bos taurus ENSBTAG00000023752 N 0.000
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.000
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.000
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.000
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.000
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.000
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.000
LOC100055599 Equus caballus ENSECAG00000011652 I 0.000
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.000
PABPN1 Gallus gallus ENSGALG00000006242 I 0.000
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.000
PABPN1 Homo sapiens ENSG00000100836 D 0.000
PABPN1L Homo sapiens ENSG00000205022 I 0.000
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.000
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.000
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.000
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.000
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.000
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.000
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.000
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.000
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.000
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.000
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.000
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.000
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.000
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.000
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.000
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.000
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.000
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.000
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.000
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.000
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.000
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.000
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.000
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.000
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.000
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.000
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.000
Q6TY21 Xenopus laevis Q6TY21 I 0.000
AAR26263 Xenopus laevis AAR26263 I 0.000
AAO33927 Xenopus laevis AAO33927 N 0.000
AAI70311 Xenopus laevis AAI70311 I 0.000
AAI70309 Xenopus laevis AAI70309 I 0.000
2JWN_B Xenopus laevis 2JWN_B I 0.000
Q804A5 Xenopus laevis Q804A5 N 0.000
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.000