cassava33553.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava33553.m1 T24702_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava33553.m1 PUF 458 492
cassava33553.m1 PUF 494 527
cassava33553.m1 PUF 530 564
cassava33553.m1 PUF 566 600
cassava33553.m1 PUF 602 636
cassava33553.m1 PUF 640 673
cassava33553.m1 PUF 675 709
cassava33553.m1 PUF 722 751

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R018249 Ailuropoda melanoleuca Ame_R018249 I 0.000
YTHDC1 Anolis carolinensis ENSACAG00000009697 I 0.000
amel4_ncbi_hmm4222 Apis mellifera amel4_ncbi_hmm4222 I 0.000
Q29RQ7_BOVIN Bos taurus ENSBTAG00000015572 I 0.000
YTHDC1 Callithrix jacchus ENSCJAG00000009934 I 0.000
YTHDC1 Canis familiaris ENSCAFG00000002821 I 0.000
YTHDC1 Cavia porcellus ENSCPOG00000010929 I 0.000
ythdc1 Danio rerio ENSDARG00000051953 I 0.000
YTHDC1 Dasypus novemcinctus ENSDNOG00000004949 I 0.000
Ythdc1 Dipodomys ordii ENSDORG00000013045 I 0.000
LOC100066303 Equus caballus ENSECAG00000018303 I 0.000
YTHDC1 Erinaceus europaeus ENSEEUG00000015466 I 0.000
Q5F341_CHICK Gallus gallus ENSGALG00000011795 I 0.000
YTHDC1 Gasterosteus aculeatus ENSGACG00000015486 I 0.000
YTHDC1 Gorilla gorilla ENSGGOG00000021958 I 0.000
YTHDC1 Homo sapiens ENSG00000083896 D 0.000
YTHDC1 Loxodonta africana ENSLAFG00000021592 I 0.000
YTHDC1 Macaca mulatta ENSMMUG00000002265 I 0.000
YTHDC1 Meleagris gallopavo ENSMGAG00000010391 I 0.000
ENSMODG00000014337 Monodelphis domestica ENSMODG00000014337 I 0.000
ENSMODG00000010076 Monodelphis domestica ENSMODG00000010076 I 0.000
ENSMODG00000009173 Monodelphis domestica ENSMODG00000009173 I 0.000
ENSMODG00000004117 Monodelphis domestica ENSMODG00000004117 I 0.000
ENSMODG00000020754 Monodelphis domestica ENSMODG00000020754 I 0.000
Ythdc1 Mus musculus ENSMUSG00000035851 I 0.000
YTHDC1 Myotis lucifugus ENSMLUG00000016300 I 0.000
nasonia_NCBI_hmm460384 Nasonia vitripennis nasonia_NCBI_hmm460384 I 0.000
YTHDC1 Ochotona princeps ENSOPRG00000008986 I 0.000
YTHDC1 Ornithorhynchus anatinus ENSOANG00000014398 I 0.000
YTHDC1 Oryctolagus cuniculus ENSOCUG00000015886 I 0.000
YTHDC1 Otolemur garnettii ENSOGAG00000003362 I 0.000
YTHDC1 Pan troglodytes ENSPTRG00000016105 I 0.000
PHUM305930 Pediculus humanus PHUM305930 I 0.000
ENSPPYG00000014726 Pongo pygmaeus ENSPPYG00000014726 I 0.000
YTHDC1 Pteropus vampyrus ENSPVAG00000015551 I 0.000
Ythdc1 Rattus norvegicus ENSRNOG00000001996 I 0.000
YTHDC1 Sorex araneus ENSSARG00000010960 I 0.000
XP_783255.2 Strongylocentrotus purpuratus XP_783255.2 I 0.000
XP_001181366.1 Strongylocentrotus purpuratus XP_001181366.1 I 0.000
YTHDC1 Taeniopygia guttata ENSTGUG00000004452 I 0.000
YTHDC1 Takifugu rubripes ENSTRUG00000010142 I 0.000
YTHDC1 Tarsius syrichta ENSTSYG00000011668 I 0.000
YTHDC1 Tetraodon nigroviridis ENSTNIG00000013243 I 0.000
YTHDC1 Tupaia belangeri ENSTBEG00000011546 I 0.000
YTHDC1 Tursiops truncatus ENSTTRG00000005083 I 0.000
YTHDC1 Vicugna pacos ENSVPAG00000009040 I 0.000
AAH84321 Xenopus laevis AAH84321 I 0.000
ythdc1 Xenopus tropicalis ENSXETG00000017960 I 0.000