CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CC1G_10837
(
Coprinopsis cinerea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CC1G_10837
T28565_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CC1G_10837T0
RRM
14
84
VYLGNLDERCTDALIWELMLQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYACKIMNQIKLWGKPIR
CC1G_10837T0
RRM
101
172
LFVGNLDENVDERLLYDTFSAFGMMATTAKIARDPSTGVSKGYGFVSYTDFESSDAAIESMNGQFLMNKAIT
Links
Other
RRM
family RBPs
Other
Coprinopsis cinerea
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF18028
Drosophila ananassae
FBgn0095046
N
0.000
GG12456
Drosophila erecta
FBgn0104744
N
0.000
GH23839
Drosophila grimshawi
FBgn0131296
N
0.000
unk
Drosophila melanogaster
FBgn0004395
N
0.000
GI24572
Drosophila mojavensis
FBgn0147294
N
0.000
GL23594
Drosophila persimilis
FBgn0161184
N
0.000
GA18308-RA
Drosophila pseudoobscura
FBgn0078313
N
0.000
GM23588
Drosophila sechellia
FBgn0178453
N
0.000
GD18402
Drosophila simulans
FBgn0189927
N
0.000
GJ22639
Drosophila virilis
FBgn0209743
N
0.000