CJA17900 (Caenorhabditis japonica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CJA17900 T34175_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
asd-1
M171_0.6 		Caenorhabditis elegans WGCAUGH RNAcompete
Ray et al.(2013)
RNCMPT00180 		0.826
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CJA17900 RRM 119 187

Links

Other RRM family RBPs
Other Caenorhabditis japonica RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R015605 Ailuropoda melanoleuca Ame_R015605 N 0.000
NUP153 Bos taurus ENSBTAG00000017128 N 0.000
NUP153 Callithrix jacchus ENSCJAG00000006685 N 0.000
NUP153 Canis familiaris ENSCAFG00000010146 N 0.000
NUP153 Cavia porcellus ENSCPOG00000004007 N 0.000
ENSCHOG00000003510 Choloepus hoffmanni ENSCHOG00000003510 N 0.000
ENSCHOG00000013388 Choloepus hoffmanni ENSCHOG00000013388 N 0.000
ENSCHOG00000008316 Choloepus hoffmanni ENSCHOG00000008316 N 0.000
ENSCHOG00000007137 Choloepus hoffmanni ENSCHOG00000007137 N 0.000
Nup153 Dipodomys ordii ENSDORG00000001736 N 0.000
NUP153 Equus caballus ENSECAG00000016010 N 0.000
NUP153 Erinaceus europaeus ENSEEUG00000010183 N 0.000
NUP153 Felis catus ENSFCAG00000011583 N 0.000
NUP153 Gorilla gorilla ENSGGOG00000014261 N 0.000
NUP153 Homo sapiens ENSG00000124789 N 0.000
NUP153 Loxodonta africana ENSLAFG00000015905 N 0.000
NUP153 Macaca mulatta ENSMMUG00000001993 N 0.000
Nup153 Mus musculus ENSMUSG00000021374 N 0.000
NUP153 Myotis lucifugus ENSMLUG00000004775 N 0.000
NUP153 Ochotona princeps ENSOPRG00000006221 N 0.000
NUP153 Ornithorhynchus anatinus ENSOANG00000011858 N 0.000
NUP153 Oryctolagus cuniculus ENSOCUG00000003064 N 0.000
NUP153 Otolemur garnettii ENSOGAG00000014899 N 0.000
NUP153 Pan troglodytes ENSPTRG00000017752 N 0.000
ENSPPYG00000016259 Pongo pygmaeus ENSPPYG00000016259 N 0.000
NUP153 Pteropus vampyrus ENSPVAG00000012632 N 0.000
Nup153 Rattus norvegicus ENSRNOG00000001456 N 0.000
NUP153 Sorex araneus ENSSARG00000013269 N 0.000
ENSTSYG00000001251 Tarsius syrichta ENSTSYG00000001251 N 0.000
ENSTSYG00000001592 Tarsius syrichta ENSTSYG00000001592 N 0.000
ENSTSYG00000010775 Tarsius syrichta ENSTSYG00000010775 N 0.000
NUP153 Tupaia belangeri ENSTBEG00000004161 N 0.000
NUP153 Vicugna pacos ENSVPAG00000002072 N 0.000