ENSCJAG00000001353 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000001353 T35466_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.936
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.936
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.936
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.915
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002389 RRM 16 84
ENSCJAP00000002389 RRM 106 175

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

317 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002871058.1 Arabidopsis lyrata scaffold_600404.1 N 0.000
AT5G04600 Arabidopsis thaliana AT5G04600-TAIR-G N 0.000
BRADI3G35650 Brachypodium distachyon BRADI3G35650 N 0.000
PK02111.1 Cannabis sativa PK02111.1 N 0.000
CIMG_04180 Coccidioides immitis CIMG_04180 N 0.000
CPSG_03082 Coccidioides posadasii CPSG_03082 N 0.000
CC1G_06273 Coprinopsis cinerea CC1G_06273 N 0.000
Cucsa.364800 Cucumis sativus Cucsa.364800 N 0.000
DEHA0A05764g Debaryomyces hansenii DEHA0A05764g N 0.000
Glyma02g29190.1 Glycine max Glyma02g29190.1 N 0.000
Glyma09g17080.1 Glycine max Glyma09g17080.1 N 0.000
MDP0000340057 Malus x domestica MDP0000340057 N 0.000
cassava18017.valid.m1 Manihot esculenta cassava18017.valid.m1 N 0.000
Medtr8g129780 Medicago truncatula Medtr8g129780 N 0.000
mgf009918m Mimulus guttatus mgf009918m N 0.000
e_gw1.10.335.1 Mucor circinelloides e_gw1.10.335.1 N 0.000
LOC_Os08g31810 Oryza sativa LOC_Os08g31810 N 0.000
gw1.198.122.1 Physcomitrella patens gw1.198.122.1 N 0.000
e_gw1.35.197.1 Physcomitrella patens e_gw1.35.197.1 N 0.000
B9HW06_POPTR Populus trichocarpa POPTR_0010s24120 N 0.000
ppa025985m Prunus persica ppa025985m N 0.000
RO3G_08088 Rhizopus oryzae RO3G_08088 N 0.000
29428.m000321 Ricinus communis 29428.m000321 N 0.000
SOCG_03680 Schizosaccharomyces octosporus SOCG_03680 N 0.000
Sb03g045720 Sorghum bicolor Sb03g045720 N 0.000
SPPG_07834 Spizellomyces punctatus SPPG_07834 N 0.000
GSTUMT00006382001 Tuber melanosporum GSTUMT00006382001 N 0.000
GSVIVG00021851001 Vitis vinifera GSVIVG00021851001 N 0.000
GRMZM2G056350 Zea mays GRMZM2G056350 N 0.000