CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
HNRNPF
(
Felis catus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSFCAG00000006794
T37083_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFCAP00000006311
RRM
41
82
AGIHFIYTRKGRKSGEAFVELESEDDVKMAKKDRESMGHQYI
ENSFCAP00000006311
RRM
112
179
VRLQGLPFGCTKKEILQFFSGLEIVPNRITLLVDSEGKITGEAFGQFASQELAEKPLGKQERMGHRNE
ENSFCAP00000006311
RRM
288
355
VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIE
Links
Other
RRM
family RBPs
Other
Felis catus
RBPs
52 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R018226
Ailuropoda melanoleuca
Ame_R018226
I
0.000
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.705
Ame_R005224
Ailuropoda melanoleuca
Ame_R005224
I
0.776
ENSACAG00000016323
Anolis carolinensis
ENSACAG00000016323
I
0.000
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.705
HNRPF_BOVIN
Bos taurus
ENSBTAG00000008853
I
0.771
HNRH2_BOVIN
Bos taurus
ENSBTAG00000007499
I
0.000
ENSCJAG00000008291
Callithrix jacchus
ENSCJAG00000008291
I
0.000
HNRNPH2
Callithrix jacchus
ENSCJAG00000004908
I
0.000
HNRNPF
Callithrix jacchus
ENSCJAG00000016238
I
0.767
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.705
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.705
HNRNPH2
Canis familiaris
ENSCAFG00000017693
I
0.000
HNRNPF
Canis familiaris
ENSCAFG00000007044
I
0.776
HNRNPF
Cavia porcellus
ENSCPOG00000003678
I
0.776
HNRNPH2
Cavia porcellus
ENSCPOG00000012405
I
0.000
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.705
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.796
hnrnph1l
Danio rerio
ENSDARG00000005551
I
0.000
HNRNPH3
Danio rerio
ENSDARG00000039466
I
0.000
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.705
ENSDORG00000005431
Dipodomys ordii
ENSDORG00000005431
I
0.771
HNRNPH2
Echinops telfairi
ENSETEG00000008416
I
0.000
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.708
LOC100050002
Equus caballus
ENSECAG00000003229
I
0.771
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.796
LOC100057665
Equus caballus
ENSECAG00000023575
I
0.000
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.769
HNRNPH2
Felis catus
ENSFCAG00000015400
I
0.732
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.700
HNRNPH3
Gasterosteus aculeatus
ENSGACG00000016118
I
0.000
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.000
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.705
HNRNPF
Gorilla gorilla
ENSGGOG00000010867
I
0.771
HNRNPH2
Gorilla gorilla
ENSGGOG00000008096
I
0.000
HNRNPH2
Homo sapiens
ENSG00000126945
D
0.000
HNRNPF
Homo sapiens
ENSG00000169813
I
0.771
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.705
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.710
HNRNPF
Loxodonta africana
ENSLAFG00000000424
I
0.767
ENSMMUG00000017392
Macaca mulatta
ENSMMUG00000017392
I
0.000
HNRNPF
Macaca mulatta
ENSMMUG00000020982
I
0.771
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.700
ENSMICG00000014218
Microcebus murinus
ENSMICG00000014218
I
0.748
HNRNPF
Microcebus murinus
ENSMICG00000001490
I
0.776
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.705
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.705
Hnrnpf
Mus musculus
ENSMUSG00000042079
I
0.771
Hnrnph2
Mus musculus
ENSMUSG00000045427
I
0.000
HNRNPF
Myotis lucifugus
ENSMLUG00000007261
I
0.000
HNRNPH2
Ochotona princeps
ENSOPRG00000007985
I
0.000
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.705
ENSOCUG00000024604
Oryctolagus cuniculus
ENSOCUG00000024604
I
0.727
ENSOCUG00000006387
Oryctolagus cuniculus
ENSOCUG00000006387
I
0.000
ENSOCUG00000010629
Oryctolagus cuniculus
ENSOCUG00000010629
I
0.000
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.705
ENSOCUG00000024719
Oryctolagus cuniculus
ENSOCUG00000024719
I
0.776
HNRNPH1
Oryzias latipes
ENSORLG00000006932
I
0.000
HNRNPH3
Oryzias latipes
ENSORLG00000010499
I
0.000
HNRNPH1
Otolemur garnettii
ENSOGAG00000012631
I
0.000
HNRNPF
Otolemur garnettii
ENSOGAG00000013734
I
0.776
HNRNPH2
Pan troglodytes
ENSPTRG00000022107
I
0.000
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.705
HNRNPF
Pan troglodytes
ENSPTRG00000002446
I
0.771
ENSPPYG00000020553
Pongo pygmaeus
ENSPPYG00000020553
I
0.000
ENSPPYG00000002212
Pongo pygmaeus
ENSPPYG00000002212
I
0.771
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.705
HNRNPF
Procavia capensis
ENSPCAG00000013169
I
0.762
HNRNPH2
Procavia capensis
ENSPCAG00000003333
I
0.000
HNRNPH2
Pteropus vampyrus
ENSPVAG00000001571
I
0.000
HNRNPH1
Pteropus vampyrus
ENSPVAG00000007670
I
0.000
HNRNPF
Pteropus vampyrus
ENSPVAG00000011646
I
0.776
ENSRNOG00000015533
Rattus norvegicus
ENSRNOG00000015533
I
0.000
Hnrnpf
Rattus norvegicus
ENSRNOG00000014562
I
0.771
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.705
Hnrnph2
Rattus norvegicus
ENSRNOG00000011661
I
0.000
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.785
HNRNPH2
Sorex araneus
ENSSARG00000014182
I
0.000
HNRNPF
Sorex araneus
ENSSARG00000010059
I
0.771
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.705
HNRNPF
Sus scrofa
ENSSSCG00000010203
I
0.771
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.790
HNRNPH1
Takifugu rubripes
ENSTRUG00000001031
I
0.000
HNRNPH3
Takifugu rubripes
ENSTRUG00000005350
I
0.000
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.796
HNRNPH2
Tarsius syrichta
ENSTSYG00000007811
I
0.000
HNRNPH3
Tetraodon nigroviridis
ENSTNIG00000013788
I
0.000
HNRNPH2
Tursiops truncatus
ENSTTRG00000012786
I
0.000
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.785
HNRNPH1
Vicugna pacos
ENSVPAG00000007485
I
0.000
AAH70969
Xenopus laevis
AAH70969
I
0.000
AAH77770
Xenopus laevis
AAH77770
I
0.000
AAI10708
Xenopus laevis
AAI10708
I
0.000
hnrnph2
Xenopus tropicalis
ENSXETG00000018321
I
0.000