HNRNPF (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000013169 T40395_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPH2
M151_0.6 		Homo sapiens GGGAGGG RNAcompete
Ray et al.(2013)
RNCMPT00160 		0.843
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000012246 RRM 13 84
ENSPCAP00000012246 RRM 113 182
ENSPCAP00000012246 RRM 291 358

Links

Other RRM family RBPs
Other Procavia capensis RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPF Loxodonta africana ENSLAFG00000000424 I 0.990
HNRNPF Cavia porcellus ENSCPOG00000003678 I 0.976
HNRNPF Microcebus murinus ENSMICG00000001490 I 0.971
HNRNPF Otolemur garnettii ENSOGAG00000013734 I 0.971
Hnrnpf Mus musculus ENSMUSG00000042079 I 0.967
Hnrnpf Rattus norvegicus ENSRNOG00000014562 I 0.967
ENSOCUG00000024719 Oryctolagus cuniculus ENSOCUG00000024719 I 0.967
HNRNPF Sus scrofa ENSSSCG00000010203 I 0.962
HNRNPF Canis familiaris ENSCAFG00000007044 I 0.962
HNRNPF Sorex araneus ENSSARG00000010059 I 0.962
Ame_R005224 Ailuropoda melanoleuca Ame_R005224 I 0.962
ENSDORG00000005431 Dipodomys ordii ENSDORG00000005431 I 0.962
LOC100050002 Equus caballus ENSECAG00000003229 I 0.962
HNRPF_BOVIN Bos taurus ENSBTAG00000008853 I 0.957
HNRNPF Pteropus vampyrus ENSPVAG00000011646 I 0.957
HNRNPF Pan troglodytes ENSPTRG00000002446 I 0.957
HNRNPF Homo sapiens ENSG00000169813 I 0.957
ENSPPYG00000002212 Pongo pygmaeus ENSPPYG00000002212 I 0.957
HNRNPF Gorilla gorilla ENSGGOG00000010867 I 0.957
HNRNPF Macaca mulatta ENSMMUG00000020982 I 0.957
HNRNPF Callithrix jacchus ENSCJAG00000016238 I 0.952
ENSMICG00000014218 Microcebus murinus ENSMICG00000014218 I 0.919
ENSOCUG00000024604 Oryctolagus cuniculus ENSOCUG00000024604 I 0.895
ENSMGAG00000007328 Meleagris gallopavo ENSMGAG00000007328 I 0.862
ENSMODG00000009436 Monodelphis domestica ENSMODG00000009436 I 0.862
ENSOANG00000010222 Ornithorhynchus anatinus ENSOANG00000010222 I 0.862
Q5F3I8_CHICK Gallus gallus ENSGALG00000005955 I 0.862
HNRNPH1 Loxodonta africana ENSLAFG00000015766 I 0.862
HNRNPH1 Homo sapiens ENSG00000169045 I 0.852
HNRNPH1 Canis familiaris ENSCAFG00000000336 I 0.852
HNRNPH1 Cavia porcellus ENSCPOG00000001485 I 0.852
Hnrnph1 Dipodomys ordii ENSDORG00000005453 I 0.852
HNRNPH1 Gorilla gorilla ENSGGOG00000025844 I 0.852
HNRNPH1 Bos taurus ENSBTAG00000009389 I 0.852
HNRNPH1 Callithrix jacchus ENSCJAG00000009931 I 0.852
Ame_R009346 Ailuropoda melanoleuca Ame_R009346 I 0.852
Hnrph1 Rattus norvegicus ENSRNOG00000003399 I 0.852
HNRNPH1 Pan troglodytes ENSPTRG00000017617 I 0.852
ENSPPYG00000016121 Pongo pygmaeus ENSPPYG00000016121 I 0.852
HNRNPH1 Oryctolagus cuniculus ENSOCUG00000017150 I 0.852
HNRNPH1 Sus scrofa ENSSSCG00000014022 I 0.852
Hnrnph1 Mus musculus ENSMUSG00000007850 I 0.852
ENSRNOG00000015533 Rattus norvegicus ENSRNOG00000015533 I 0.848
Hnrnph2 Mus musculus ENSMUSG00000045427 I 0.848
ENSACAG00000016323 Anolis carolinensis ENSACAG00000016323 I 0.848
Hnrnph2 Rattus norvegicus ENSRNOG00000011661 I 0.848
HNRNPH2 Homo sapiens ENSG00000126945 D 0.843
HNRNPH2 Pan troglodytes ENSPTRG00000022107 I 0.843
ENSPPYG00000020553 Pongo pygmaeus ENSPPYG00000020553 I 0.843
HNRNPH2 Macaca mulatta ENSMMUG00000019580 I 0.843
HNRNPH2 Callithrix jacchus ENSCJAG00000004908 I 0.843
HNRNPH2 Gorilla gorilla ENSGGOG00000008096 I 0.843
HNRNPH2 Procavia capensis ENSPCAG00000003333 I 0.838
ENSOCUG00000010629 Oryctolagus cuniculus ENSOCUG00000010629 I 0.838
ENSOCUG00000006387 Oryctolagus cuniculus ENSOCUG00000006387 I 0.838
HNRNPH2 Ochotona princeps ENSOPRG00000007985 I 0.838
HNRNPH2 Cavia porcellus ENSCPOG00000012405 I 0.838
LOC100057665 Equus caballus ENSECAG00000023575 I 0.838
hnrnph2 Xenopus tropicalis ENSXETG00000018321 I 0.838
Ame_R018226 Ailuropoda melanoleuca Ame_R018226 I 0.838
HNRNPH2 Canis familiaris ENSCAFG00000017693 I 0.838
HNRH2_BOVIN Bos taurus ENSBTAG00000007499 I 0.838
HNRNPH2 Echinops telfairi ENSETEG00000008416 I 0.838
HNRNPH2 Pteropus vampyrus ENSPVAG00000001571 I 0.838
HNRNPH2 Tursiops truncatus ENSTTRG00000012786 I 0.838
HNRNPH2 Sorex araneus ENSSARG00000014182 I 0.838
HNRNPH1 Echinops telfairi ENSETEG00000011303 I 0.838
HNRNPH2 Tarsius syrichta ENSTSYG00000007811 I 0.838
HNRNPF Myotis lucifugus ENSMLUG00000007261 I 0.833
AAI10708 Xenopus laevis AAI10708 I 0.833
AAH77770 Xenopus laevis AAH77770 I 0.833
hnrnph1l Danio rerio ENSDARG00000005551 I 0.833
HNRNPH1 Gasterosteus aculeatus ENSGACG00000018352 I 0.814
HNRNPH1 Takifugu rubripes ENSTRUG00000001031 I 0.814
AAH70969 Xenopus laevis AAH70969 I 0.814
HNRNPH1 Oryzias latipes ENSORLG00000006932 I 0.805
HNRNPH2 Felis catus ENSFCAG00000015400 I 0.790
HNRNPH1 Taeniopygia guttata ENSTGUG00000001085 I 0.776
ENSCHOG00000003841 Choloepus hoffmanni ENSCHOG00000003841 I 0.771
HNRNPH1 Tarsius syrichta ENSTSYG00000006417 I 0.771
LOC100067495 Equus caballus ENSECAG00000014429 I 0.771
HNRNPF Felis catus ENSFCAG00000006794 N 0.762
HNRNPH1 Sorex araneus ENSSARG00000003024 I 0.762
HNRNPH1 Tursiops truncatus ENSTTRG00000000470 I 0.752
HNRNPH1 Felis catus ENSFCAG00000001204 I 0.748
HNRNPH1 Otolemur garnettii ENSOGAG00000012631 I 0.748
HNRNPH3 Tetraodon nigroviridis ENSTNIG00000013788 I 0.738
HNRNPH3 Takifugu rubripes ENSTRUG00000005350 I 0.729
HNRNPH3 Danio rerio ENSDARG00000039466 I 0.724
HNRNPH3 Gasterosteus aculeatus ENSGACG00000016118 I 0.724
HNRNPH3 Oryzias latipes ENSORLG00000010499 I 0.714
ENSMMUG00000017392 Macaca mulatta ENSMMUG00000017392 I 0.705