CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPF
(
Felis catus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSFCAG00000006794
T37083_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFCAP00000006311
RRM
41
82
AGIHFIYTRKGRKSGEAFVELESEDDVKMAKKDRESMGHQYI
ENSFCAP00000006311
RRM
112
179
VRLQGLPFGCTKKEILQFFSGLEIVPNRITLLVDSEGKITGEAFGQFASQELAEKPLGKQERMGHRNE
ENSFCAP00000006311
RRM
288
355
VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIE
Links
Other
RRM
family RBPs
Other
Felis catus
RBPs
52 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPH1
Tarsius syrichta
ENSTSYG00000006417
I
0.796
ENSCHOG00000003841
Choloepus hoffmanni
ENSCHOG00000003841
I
0.796
LOC100067495
Equus caballus
ENSECAG00000014429
I
0.796
HNRNPH1
Taeniopygia guttata
ENSTGUG00000001085
I
0.790
HNRNPH1
Tursiops truncatus
ENSTTRG00000000470
I
0.785
HNRNPH1
Sorex araneus
ENSSARG00000003024
I
0.785
HNRNPF
Otolemur garnettii
ENSOGAG00000013734
I
0.776
Ame_R005224
Ailuropoda melanoleuca
Ame_R005224
I
0.776
HNRNPF
Cavia porcellus
ENSCPOG00000003678
I
0.776
HNRNPF
Canis familiaris
ENSCAFG00000007044
I
0.776
ENSOCUG00000024719
Oryctolagus cuniculus
ENSOCUG00000024719
I
0.776
HNRNPF
Pteropus vampyrus
ENSPVAG00000011646
I
0.776
HNRNPF
Microcebus murinus
ENSMICG00000001490
I
0.776
LOC100050002
Equus caballus
ENSECAG00000003229
I
0.771
ENSPPYG00000002212
Pongo pygmaeus
ENSPPYG00000002212
I
0.771
HNRNPF
Pan troglodytes
ENSPTRG00000002446
I
0.771
HNRNPF
Homo sapiens
ENSG00000169813
I
0.771
Hnrnpf
Rattus norvegicus
ENSRNOG00000014562
I
0.771
ENSDORG00000005431
Dipodomys ordii
ENSDORG00000005431
I
0.771
HNRNPF
Sus scrofa
ENSSSCG00000010203
I
0.771
HNRNPF
Sorex araneus
ENSSARG00000010059
I
0.771
HNRNPF
Gorilla gorilla
ENSGGOG00000010867
I
0.771
HNRNPF
Macaca mulatta
ENSMMUG00000020982
I
0.771
HNRPF_BOVIN
Bos taurus
ENSBTAG00000008853
I
0.771
Hnrnpf
Mus musculus
ENSMUSG00000042079
I
0.771
HNRNPH1
Felis catus
ENSFCAG00000001204
I
0.769
HNRNPF
Loxodonta africana
ENSLAFG00000000424
I
0.767
HNRNPF
Callithrix jacchus
ENSCJAG00000016238
I
0.767
HNRNPF
Procavia capensis
ENSPCAG00000013169
I
0.762
ENSMICG00000014218
Microcebus murinus
ENSMICG00000014218
I
0.748
HNRNPH2
Felis catus
ENSFCAG00000015400
I
0.732
ENSOCUG00000024604
Oryctolagus cuniculus
ENSOCUG00000024604
I
0.727
HNRNPH1
Loxodonta africana
ENSLAFG00000015766
I
0.710
HNRNPH1
Echinops telfairi
ENSETEG00000011303
I
0.708
HNRNPH1
Homo sapiens
ENSG00000169045
I
0.705
HNRNPH1
Callithrix jacchus
ENSCJAG00000009931
I
0.705
Hnrnph1
Dipodomys ordii
ENSDORG00000005453
I
0.705
HNRNPH1
Cavia porcellus
ENSCPOG00000001485
I
0.705
HNRNPH1
Canis familiaris
ENSCAFG00000000336
I
0.705
HNRNPH1
Sus scrofa
ENSSSCG00000014022
I
0.705
ENSPPYG00000016121
Pongo pygmaeus
ENSPPYG00000016121
I
0.705
HNRNPH1
Pan troglodytes
ENSPTRG00000017617
I
0.705
HNRNPH1
Oryctolagus cuniculus
ENSOCUG00000017150
I
0.705
ENSOANG00000010222
Ornithorhynchus anatinus
ENSOANG00000010222
I
0.705
Hnrnph1
Mus musculus
ENSMUSG00000007850
I
0.705
Hnrph1
Rattus norvegicus
ENSRNOG00000003399
I
0.705
ENSMODG00000009436
Monodelphis domestica
ENSMODG00000009436
I
0.705
Ame_R009346
Ailuropoda melanoleuca
Ame_R009346
I
0.705
HNRNPH1
Bos taurus
ENSBTAG00000009389
I
0.705
HNRNPH1
Gorilla gorilla
ENSGGOG00000025844
I
0.705
Q5F3I8_CHICK
Gallus gallus
ENSGALG00000005955
I
0.700
ENSMGAG00000007328
Meleagris gallopavo
ENSMGAG00000007328
I
0.700