HNRNPF (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000003678 T35767_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPH2
M151_0.6 		Homo sapiens GGGAGGG RNAcompete
Ray et al.(2013)
RNCMPT00160 		0.838
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000016435 RRM 13 84
ENSCPOP00000016435 RRM 113 182
ENSCPOP00000016435 RRM 291 358

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPF Microcebus murinus ENSMICG00000001490 I 0.995
HNRNPF Otolemur garnettii ENSOGAG00000013734 I 0.995
Hnrnpf Rattus norvegicus ENSRNOG00000014562 I 0.990
ENSOCUG00000024719 Oryctolagus cuniculus ENSOCUG00000024719 I 0.990
Hnrnpf Mus musculus ENSMUSG00000042079 I 0.990
HNRNPF Sus scrofa ENSSSCG00000010203 I 0.986
Ame_R005224 Ailuropoda melanoleuca Ame_R005224 I 0.986
HNRNPF Sorex araneus ENSSARG00000010059 I 0.986
HNRNPF Canis familiaris ENSCAFG00000007044 I 0.986
LOC100050002 Equus caballus ENSECAG00000003229 I 0.986
ENSDORG00000005431 Dipodomys ordii ENSDORG00000005431 I 0.986
HNRNPF Gorilla gorilla ENSGGOG00000010867 I 0.981
HNRNPF Macaca mulatta ENSMMUG00000020982 I 0.981
HNRNPF Homo sapiens ENSG00000169813 I 0.981
ENSPPYG00000002212 Pongo pygmaeus ENSPPYG00000002212 I 0.981
HNRNPF Pan troglodytes ENSPTRG00000002446 I 0.981
HNRPF_BOVIN Bos taurus ENSBTAG00000008853 I 0.981
HNRNPF Procavia capensis ENSPCAG00000013169 I 0.976
HNRNPF Callithrix jacchus ENSCJAG00000016238 I 0.976
HNRNPF Loxodonta africana ENSLAFG00000000424 I 0.976
HNRNPF Pteropus vampyrus ENSPVAG00000011646 I 0.967
ENSMICG00000014218 Microcebus murinus ENSMICG00000014218 I 0.943
ENSOCUG00000024604 Oryctolagus cuniculus ENSOCUG00000024604 I 0.914
HNRNPH1 Loxodonta africana ENSLAFG00000015766 I 0.871
HNRNPH1 Homo sapiens ENSG00000169045 I 0.862
HNRNPH1 Canis familiaris ENSCAFG00000000336 I 0.862
HNRNPH1 Oryctolagus cuniculus ENSOCUG00000017150 I 0.862
HNRNPH1 Sus scrofa ENSSSCG00000014022 I 0.862
ENSPPYG00000016121 Pongo pygmaeus ENSPPYG00000016121 I 0.862
HNRNPH1 Pan troglodytes ENSPTRG00000017617 I 0.862
HNRNPH1 Callithrix jacchus ENSCJAG00000009931 I 0.862
Hnrnph1 Dipodomys ordii ENSDORG00000005453 I 0.862
HNRNPH1 Gorilla gorilla ENSGGOG00000025844 I 0.862
Hnrph1 Rattus norvegicus ENSRNOG00000003399 I 0.862
Ame_R009346 Ailuropoda melanoleuca Ame_R009346 I 0.862
Hnrnph1 Mus musculus ENSMUSG00000007850 I 0.862
HNRNPH1 Cavia porcellus ENSCPOG00000001485 I 0.862
HNRNPH1 Bos taurus ENSBTAG00000009389 I 0.862
Q5F3I8_CHICK Gallus gallus ENSGALG00000005955 I 0.862
ENSMGAG00000007328 Meleagris gallopavo ENSMGAG00000007328 I 0.862
ENSOANG00000010222 Ornithorhynchus anatinus ENSOANG00000010222 I 0.857
ENSMODG00000009436 Monodelphis domestica ENSMODG00000009436 I 0.857
ENSRNOG00000015533 Rattus norvegicus ENSRNOG00000015533 I 0.857
Hnrnph2 Mus musculus ENSMUSG00000045427 I 0.852
Hnrnph2 Rattus norvegicus ENSRNOG00000011661 I 0.852
HNRNPF Myotis lucifugus ENSMLUG00000007261 I 0.848
HNRNPH1 Echinops telfairi ENSETEG00000011303 I 0.848
HNRH2_BOVIN Bos taurus ENSBTAG00000007499 I 0.843
HNRNPH2 Sorex araneus ENSSARG00000014182 I 0.843
HNRNPH2 Pteropus vampyrus ENSPVAG00000001571 I 0.843
HNRNPH2 Tarsius syrichta ENSTSYG00000007811 I 0.843
HNRNPH2 Tursiops truncatus ENSTTRG00000012786 I 0.843
Ame_R018226 Ailuropoda melanoleuca Ame_R018226 I 0.843
ENSOCUG00000010629 Oryctolagus cuniculus ENSOCUG00000010629 I 0.843
ENSOCUG00000006387 Oryctolagus cuniculus ENSOCUG00000006387 I 0.843
HNRNPH2 Echinops telfairi ENSETEG00000008416 I 0.843
LOC100057665 Equus caballus ENSECAG00000023575 I 0.843
HNRNPH2 Ochotona princeps ENSOPRG00000007985 I 0.843
HNRNPH2 Canis familiaris ENSCAFG00000017693 I 0.843
HNRNPH2 Procavia capensis ENSPCAG00000003333 I 0.843
HNRNPH2 Cavia porcellus ENSCPOG00000012405 I 0.843
ENSPPYG00000020553 Pongo pygmaeus ENSPPYG00000020553 I 0.838
HNRNPH2 Callithrix jacchus ENSCJAG00000004908 I 0.838
HNRNPH2 Pan troglodytes ENSPTRG00000022107 I 0.838
HNRNPH2 Homo sapiens ENSG00000126945 D 0.838
HNRNPH2 Macaca mulatta ENSMMUG00000019580 I 0.838
HNRNPH2 Gorilla gorilla ENSGGOG00000008096 I 0.838
hnrnph1l Danio rerio ENSDARG00000005551 I 0.833
ENSACAG00000016323 Anolis carolinensis ENSACAG00000016323 I 0.833
hnrnph2 Xenopus tropicalis ENSXETG00000018321 I 0.824
AAI10708 Xenopus laevis AAI10708 I 0.819
AAH77770 Xenopus laevis AAH77770 I 0.819
HNRNPH1 Gasterosteus aculeatus ENSGACG00000018352 I 0.814
HNRNPH1 Takifugu rubripes ENSTRUG00000001031 I 0.810
AAH70969 Xenopus laevis AAH70969 I 0.810
HNRNPH1 Oryzias latipes ENSORLG00000006932 I 0.795
HNRNPH2 Felis catus ENSFCAG00000015400 I 0.795
ENSCHOG00000003841 Choloepus hoffmanni ENSCHOG00000003841 I 0.781
HNRNPH1 Tarsius syrichta ENSTSYG00000006417 I 0.781
LOC100067495 Equus caballus ENSECAG00000014429 I 0.781
HNRNPH1 Taeniopygia guttata ENSTGUG00000001085 I 0.776
HNRNPF Felis catus ENSFCAG00000006794 N 0.776
HNRNPH1 Sorex araneus ENSSARG00000003024 I 0.771
HNRNPH1 Tursiops truncatus ENSTTRG00000000470 I 0.762
HNRNPH1 Felis catus ENSFCAG00000001204 I 0.757
HNRNPH1 Otolemur garnettii ENSOGAG00000012631 I 0.757
HNRNPH3 Tetraodon nigroviridis ENSTNIG00000013788 I 0.743
HNRNPH3 Takifugu rubripes ENSTRUG00000005350 I 0.733
HNRNPH3 Danio rerio ENSDARG00000039466 I 0.729
HNRNPH3 Gasterosteus aculeatus ENSGACG00000016118 I 0.729
HNRNPH3 Oryzias latipes ENSORLG00000010499 I 0.719
ENSMMUG00000017392 Macaca mulatta ENSMMUG00000017392 I 0.714