CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNOT4
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000004276
T37421_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
0.974
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.740
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.701
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000005659
RRM
111
187
VFVVGLSQRLAEPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSGACP00000005660
RRM
111
187
VFVVGLSQRLAEPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSGACP00000005666
RRM
111
187
VFVVGLSQRLAEPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
68 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002863687.1
Arabidopsis lyrata
fgenesh2_kg.8__553__AT5G42820.1
N
0.000
XM_002877317.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5000707
N
0.000
XM_002890695.1
Arabidopsis lyrata
fgenesh2_kg.1__2923__AT1G27650.1
N
0.000
U2AF35B
Arabidopsis thaliana
AT5G42820-TAIR-G
N
0.000
ATU2AF35A
Arabidopsis thaliana
AT1G27650-TAIR-G
N
0.000
Chlre2_kg.scaffold_3000449
Chlamydomonas reinhardtii
Chlre2_kg.scaffold_3000449
N
0.000
estExt_fgenesh3_pg.C_90081
Chlorella NC64A
estExt_fgenesh3_pg.C_90081
N
0.000
estExt_fgeneshCV_kg.C_10018
Chlorella vulgaris
estExt_fgeneshCV_kg.C_10018
N
0.000
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA
Coccomyxa C 169
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA
N
0.000
Cucsa.272480
Cucumis sativus
Cucsa.272480
N
0.000
Glyma19g37530.1
Glycine max
Glyma19g37530.1
N
0.000
Glyma03g34840.1
Glycine max
Glyma03g34840.1
N
0.000
LjB15A13.120.nd
Lotus japonicus
LjB15A13.120.nd
N
0.000
MDP0000179037
Malus x domestica
MDP0000179037
N
0.000
MDP0000640144
Malus x domestica
MDP0000640144
N
0.000
MDP0000321343
Malus x domestica
MDP0000321343
N
0.000
cassava23933.valid.m1
Manihot esculenta
cassava23933.valid.m1
N
0.000
cassava34088.m1
Manihot esculenta
cassava34088.m1
N
0.000
cassava30766.valid.m1
Manihot esculenta
cassava30766.valid.m1
N
0.000
cassava30765.valid.m1
Manihot esculenta
cassava30765.valid.m1
N
0.000
cassava13474.valid.m1
Manihot esculenta
cassava13474.valid.m1
N
0.000
cassava12246.valid.m1
Manihot esculenta
cassava12246.valid.m1
N
0.000
cassava12245.valid.m1
Manihot esculenta
cassava12245.valid.m1
N
0.000
estExt_Genewise1Plus.C_140110
Micromonas pusilla
estExt_Genewise1Plus.C_140110
N
0.000
mgf010816m
Mimulus guttatus
mgf010816m
N
0.000
mgf001805m
Mimulus guttatus
mgf001805m
N
0.000
BGIOSIBCE030417
Oryza indica
BGIOSIBCE030417
N
0.000
LOC_Os09g31482
Oryza sativa
LOC_Os09g31482
N
0.000
fgenesh1_pm.C_Chr_15000025
Ostreococcus lucimarinus
fgenesh1_pm.C_Chr_15000025
N
0.000
e_gw1.11.331.1
Ostreococcus RCC809
e_gw1.11.331.1
N
0.000
PDK_20s1490591g003
Phoenix dactylifera
PDK_20s1490591g003
N
0.000
gw1.15.161.1
Physcomitrella patens
gw1.15.161.1
N
0.000
estExt_gwp_gw1.C_2150084
Physcomitrella patens
estExt_gwp_gw1.C_2150084
N
0.000
POPTR_0006s11790
Populus trichocarpa
POPTR_0006s11790
N
0.000
B9MYK3_POPTR
Populus trichocarpa
POPTR_0004s20030
N
0.000
B9H5X4_POPTR
Populus trichocarpa
POPTR_0005s27940
N
0.000
ppa008459m
Prunus persica
ppa008459m
N
0.000
ppa025949m
Prunus persica
ppa025949m
N
0.000
29092.m000448
Ricinus communis
29092.m000448
N
0.000
30170.m013808
Ricinus communis
30170.m013808
N
0.000
fgenesh1_pm.C_scaffold_1000024
Selaginella moellendorfii
fgenesh1_pm.C_scaffold_1000024
N
0.000
SB03G030670
Sorghum bicolor
Sb03g030670
N
0.000
Sb02g028540
Sorghum bicolor
Sb02g028540
N
0.000
GSVIVG00033771001
Vitis vinifera
GSVIVG00033771001
N
0.000
estExt_Genewise1Plus.C_470052
Volvox carteri
estExt_Genewise1Plus.C_470052
N
0.000
GRMZM2G177229
Zea mays
GRMZM2G177229
N
0.000