Tia1 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000016813 T41110_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TIA1
M156_0.6 		Homo sapiens WUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00165 		0.990
TIA1
M075_0.6 		Homo sapiens UUUUUBK RNAcompete
Ray et al.(2013)
RNCMPT00077 		0.990
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000023102 RRM 9 77
ENSRNOP00000023102 RRM 97 167
ENSRNOP00000023102 RRM 205 269
ENSRNOP00000023323 RRM 5 73
ENSRNOP00000023323 RRM 93 163
ENSRNOP00000023323 RRM 201 246
ENSRNOP00000047339 RRM 5 73
ENSRNOP00000047339 RRM 104 174
ENSRNOP00000047339 RRM 212 276

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB01113.1 Alternaria brassicicola AB01113.1 N 0.000
ARB_05069 Arthroderma benhamiae ARB_05069 N 0.000
fgenesh1_pg.00082_#_116 Aspergillus carbonarius fgenesh1_pg.00082_#_116 N 0.000
ACLA_068230 Aspergillus clavatus CADACLAG00007015 N 0.000
AFUA_2G06090 Aspergillus fumigatus CADAFUAG00003703 N 0.000
ANIA_10941 Aspergillus nidulans CADANIAG00000536 N 0.000
An02g14690 Aspergillus niger CADANGAG00002994 N 0.000
AO090001000725 Aspergillus oryzae CADAORAG00000662 N 0.000
ATEG_06805 Aspergillus terreus CADATEAG00006229 N 0.000
BDBG_05401 Blastomyces dermatitidis BDBG_05401 N 0.000
BC1G_12993 Botrytis cinerea BC1G_12993 N 0.000
CHGG_07099 Chaetomium globosum CHGG_07099 N 0.000
CIMG_00990 Coccidioides immitis CIMG_00990 N 0.000
CPSG_02224 Coccidioides posadasii CPSG_02224 N 0.000
estExt_Genewise1Plus.C_240153 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_240153 N 0.000
GLRG_03331 Colletotrichum graminicola GLRG_03331 N 0.000
estExt_Genewise1Plus.C_70091 Cryphonectria parasitica estExt_Genewise1Plus.C_70091 N 0.000
FGSG_13728 Fusarium graminearum FGSG_13728 N 0.000
FOXG_05191 Fusarium oxysporum FOXG_05191 N 0.000
FVEG_02942 Fusarium verticillioides FVEG_02942 N 0.000
HCAG_03640 Histoplasma capsulatum HCAG_03640 N 0.000
MGG_06881 Magnaporthe oryzae MGG_06881 N 0.000
MCYG_04652 Microsporum canis MCYG_04652 N 0.000
MGYG_08958 Microsporum gypseum MGYG_08958 N 0.000
gw1.3.2310.1 Myceliophthora thermophila gw1.3.2310.1 N 0.000
estExt_Genewise1Plus.C_500038 Mycosphaerella fijiensis estExt_Genewise1Plus.C_500038 N 0.000
gw1.6.1353.1 Mycosphaerella graminicola gw1.6.1353.1 N 0.000
e_gw1.5.1166.1 Nectria haematococca e_gw1.5.1166.1 N 0.000
NFIA_082870 Neosartorya fischeri CADNFIAG00006872 N 0.000
NCU12158 Neurospora crassa NCU12158 N 0.000
estExt_fgenesh3_pm.C_10926 Neurospora discreta estExt_fgenesh3_pm.C_10926 N 0.000
estExt_fgenesh1_pg.C_10265 Neurospora tetrasperma estExt_fgenesh1_pg.C_10265 N 0.000
Pc22g08010 Penicillium chrysogenum Pc22g08010 N 0.000
PMAA_028640 Penicillium marneffei PMAA_028640 N 0.000
EAT82933.2 Phaeosphaeria nodorum EAT82933.2 N 0.000
Pa_2_12560 Podospora anserina Pa_2_12560 N 0.000
SPOG_01457 Schizosaccharomyces cryophilus SPOG_01457 N 0.000
SJAG_03853 Schizosaccharomyces japonicus SJAG_03853 N 0.000
SOCG_02545 Schizosaccharomyces octosporus SOCG_02545 N 0.000
SPBC660.15 Schizosaccharomyces pombe SPBC660.15 N 0.000
SS1G_05220 Sclerotinia sclerotiorum SS1G_05220 N 0.000
estExt_Genewise1.C_23240 Thielavia terrestris estExt_Genewise1.C_23240 N 0.000
estExt_fgenesh1_pg.C_40107 Trichoderma atroviride estExt_fgenesh1_pg.C_40107 N 0.000
estExt_GeneWisePlus.C_210250 Trichoderma reesei estExt_GeneWisePlus.C_210250 N 0.000
estExt_Genewise1Plus.C_230018 Trichoderma virens estExt_Genewise1Plus.C_230018 N 0.000
TEQG_02438 Trichophyton equinum TEQG_02438 N 0.000
TERG_03265 Trichophyton rubrum TERG_03265 N 0.000
TESG_02793 Trichophyton tonsurans TESG_02793 N 0.000
TRV_06675 Trichophyton verrucosum TRV_06675 N 0.000
GSTUMT00005496001 Tuber melanosporum GSTUMT00005496001 N 0.000
UREG_00938 Uncinocarpus reesii UREG_00938 N 0.000
VDBG_00519 Verticillium albo atrum VDBG_00519 N 0.000
YALI0C13860g Yarrowia lipolytica YALI0C13860g N 0.000