CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPA2B1
(
Vicugna pacos
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSVPAG00000010417
T42797_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.833
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000009694
RRM
9
75
LFIGGLSFETTEESLRNYYEQWGKLTDCVVMSDPASKRSRGLCFGTFSFRAEVDAAMAAGPHSDGRV
ENSVPAP00000009694
RRM
98
167
LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE
Links
Other
RRM
family RBPs
Other
Vicugna pacos
RBPs
54 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL008938
Aedes aegypti
AAEL008938
N
0.000
AGAP000924
Anopheles gambiae
AGAP000924
N
0.000
amel4_ncbi_hmm17380
Apis mellifera
amel4_ncbi_hmm17380
N
0.000
nasonia_NCBI_hmm118194
Nasonia vitripennis
nasonia_NCBI_hmm118194
N
0.000