hnrnpa2b1 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000012170 T42877_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.943
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.793
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.793
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.793
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000026564 RRM 9 78
ENSXETP00000026564 RRM 100 169
ENSXETP00000026565 RRM 9 78
ENSXETP00000026565 RRM 100 169
ENSXETP00000026566 RRM 9 78
ENSXETP00000026566 RRM 100 169

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

193 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.950
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.950
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.943
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.943
P51989 Xenopus laevis P51989 I 0.943
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.943
CBU92450 Xenopus laevis CBU92450 I 0.943
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.943
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.943
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.943
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.943
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.943
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.943
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.943
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.943
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.943
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.943
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.943
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.943
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.943
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.943
AAH46692 Xenopus laevis AAH46692 I 0.943
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.943
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.943
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.943
AAA49948 Xenopus laevis AAA49948 I 0.943
LOC100068539 Equus caballus ENSECAG00000000782 I 0.943
CBF67577 Xenopus laevis CBF67577 I 0.943
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.943
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.943
AAB59951 Xenopus laevis AAB59951 I 0.936
AAH43750 Xenopus laevis AAH43750 I 0.936
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.936
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.936
P51990 Xenopus laevis P51990 I 0.936
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.936
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.936
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.936
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.936
AAI06633 Xenopus laevis AAI06633 I 0.936
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.929
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.921
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.908
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.850
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.843
LOC516616 Bos taurus ENSBTAG00000002284 I 0.836
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.800
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.799
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.772
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.769
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.762
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.762
AAH45260 Xenopus laevis AAH45260 I 0.752
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.752
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.745
P51968 Xenopus laevis P51968 I 0.745
AAA49949 Xenopus laevis AAA49949 I 0.745
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.741
AAH72090 Xenopus laevis AAH72090 I 0.738
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.738
CBF67672 Xenopus laevis CBF67672 I 0.738
CBU92546 Xenopus laevis CBU92546 I 0.738
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.738
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.738
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.738
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.736
AAI69881 Xenopus laevis AAI69881 I 0.735
AAA49950 Xenopus laevis AAA49950 I 0.735
CBF67578 Xenopus laevis CBF67578 I 0.735
CBU92451 Xenopus laevis CBU92451 I 0.735
P51992 Xenopus laevis P51992 I 0.735
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.732
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.731
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.731
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.731
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.731
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.731
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.731
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.731
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.731
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.731
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.731
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.731
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.731
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.731
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.731
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.731
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.731
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.731
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.731
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.731
P17130 Xenopus laevis P17130 I 0.731
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.731
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.731
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.731
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.731
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.731
CBU92428 Xenopus laevis CBU92428 I 0.731
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.731
AAA49742 Xenopus laevis AAA49742 I 0.731
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.731
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.731
HNRNPA1 Homo sapiens ENSG00000135486 D 0.731
AAA49741 Xenopus laevis AAA49741 I 0.731
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.731
CBF67555 Xenopus laevis CBF67555 I 0.731
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.731
LOC538435 Bos taurus ENSBTAG00000038680 I 0.727
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.726
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.724
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.724
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.724
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.724
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.724
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.724
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.724
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.724
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.724
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.724
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.722
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.719
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.719
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.719
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.719
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.719
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.719
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.719
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.719
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.719
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.719
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.719
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.719
LOC781499 Bos taurus ENSBTAG00000021580 I 0.719
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.719
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.719
HNRNPA3 Homo sapiens ENSG00000170144 I 0.719
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.719
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.719
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.719
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.718
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.717
LOC100066794 Equus caballus ENSECAG00000023237 I 0.717
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.717
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.717
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.717
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.717
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.717
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.717
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.717
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.717
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.715
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.714
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.714
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.712
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.710
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.710
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.710
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.710
LOC785445 Bos taurus ENSBTAG00000025621 I 0.710
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.710
Gm8991 Mus musculus ENSMUSG00000059179 I 0.710
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.710
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.710
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.710
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.710
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.710
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.710
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.708
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.708
LOC100054206 Equus caballus ENSECAG00000006699 I 0.708
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.707
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.707
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.704
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.703
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.703
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.703
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.703
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.703
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.703
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.703
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.703
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.703
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.703
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.703
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.702
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.701
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.701
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.700
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.700