ENSSSCG00000015836 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000015836 T41526_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.986
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.800
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.800
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.800
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000016782 RRM 23 92
ENSSSCP00000016782 RRM 114 183

Links

Other RRM family RBPs
Other Sus scrofa RBPs

196 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.986
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.986
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.986
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.986
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.986
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.986
LOC100068539 Equus caballus ENSECAG00000000782 I 0.986
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.986
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.986
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.986
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.986
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.986
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.986
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.986
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.986
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.986
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.986
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.986
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.986
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.986
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.986
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.986
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.979
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.979
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.979
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.979
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.979
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.979
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.979
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.971
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.971
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.951
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.950
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.929
P51989 Xenopus laevis P51989 I 0.921
CBU92450 Xenopus laevis CBU92450 I 0.921
AAA49948 Xenopus laevis AAA49948 I 0.921
AAH46692 Xenopus laevis AAH46692 I 0.921
CBF67577 Xenopus laevis CBF67577 I 0.921
P51990 Xenopus laevis P51990 I 0.900
AAH43750 Xenopus laevis AAH43750 I 0.900
AAI06633 Xenopus laevis AAI06633 I 0.900
AAB59951 Xenopus laevis AAB59951 I 0.900
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.886
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.886
LOC516616 Bos taurus ENSBTAG00000002284 I 0.857
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.840
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.828
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.807
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.797
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.797
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.797
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.771
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.762
LOC538435 Bos taurus ENSBTAG00000038680 I 0.755
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.752
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.745
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.739
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.738
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.738
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.738
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.738
HNRNPA1 Homo sapiens ENSG00000135486 D 0.738
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.738
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.738
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.738
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.738
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.738
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.738
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.738
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.738
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.738
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.738
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.738
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.738
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.738
AAH45260 Xenopus laevis AAH45260 I 0.738
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.738
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.738
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.738
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.738
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.738
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.738
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.738
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.738
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.738
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.738
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.738
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.738
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.733
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.731
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.731
P51968 Xenopus laevis P51968 I 0.731
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.731
AAA49949 Xenopus laevis AAA49949 I 0.731
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.731
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.731
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.731
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.731
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.731
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.731
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.731
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.731
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.729
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.729
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.724
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.724
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.724
AAH72090 Xenopus laevis AAH72090 I 0.724
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.724
CBF67672 Xenopus laevis CBF67672 I 0.724
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.724
CBU92546 Xenopus laevis CBU92546 I 0.724
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.724
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.724
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.724
LOC100054206 Equus caballus ENSECAG00000006699 I 0.722
AAI69881 Xenopus laevis AAI69881 I 0.721
P51992 Xenopus laevis P51992 I 0.721
AAA49950 Xenopus laevis AAA49950 I 0.721
CBU92451 Xenopus laevis CBU92451 I 0.721
CBF67578 Xenopus laevis CBF67578 I 0.721
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.719
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.719
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.719
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.719
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.719
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.719
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.719
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.719
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.719
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.719
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.719
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.719
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.719
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.719
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.719
HNRNPA3 Homo sapiens ENSG00000170144 I 0.719
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.719
LOC781499 Bos taurus ENSBTAG00000021580 I 0.719
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.719
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.718
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.717
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.717
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.717
CBU92428 Xenopus laevis CBU92428 I 0.717
P17130 Xenopus laevis P17130 I 0.717
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.717
CBF67555 Xenopus laevis CBF67555 I 0.717
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.717
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.717
LOC785445 Bos taurus ENSBTAG00000025621 I 0.717
AAA49741 Xenopus laevis AAA49741 I 0.717
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.717
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.717
AAA49742 Xenopus laevis AAA49742 I 0.717
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.717
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.717
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.717
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.717
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.717
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.717
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.717
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.717
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.717
LOC100066794 Equus caballus ENSECAG00000023237 I 0.717
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.717
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.715
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.714
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.714
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.712
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.710
Gm8991 Mus musculus ENSMUSG00000059179 I 0.710
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.710
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.710
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.710
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.710
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.710
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.710
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.710
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.708
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.708
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.707
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.707
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.703
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.703
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.703
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.703
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.703
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.703
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.703
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.702
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.701
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.700
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.700
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.700