ENSSSCG00000013607 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000013607 T41509_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.900
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.764
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.764
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.764
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.743
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000014461 RRM 23 92
ENSSSCP00000014461 RRM 114 183

Links

Other RRM family RBPs
Other Sus scrofa RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.900
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.900
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.900
LOC100068539 Equus caballus ENSECAG00000000782 I 0.900
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.900
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.900
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.900
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.900
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.900
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.900
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.900
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.900
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.900
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.900
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.900
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.900
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.900
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.900
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.900
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.900
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.900
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.900
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.893
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.893
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.893
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.893
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.893
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.893
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.893
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.886
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.886
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.886
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.886
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.866
LOC516616 Bos taurus ENSBTAG00000002284 I 0.857
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.850
AAA49948 Xenopus laevis AAA49948 I 0.836
CBU92450 Xenopus laevis CBU92450 I 0.836
CBF67577 Xenopus laevis CBF67577 I 0.836
P51989 Xenopus laevis P51989 I 0.836
AAH46692 Xenopus laevis AAH46692 I 0.836
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.829
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.818
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.818
P51990 Xenopus laevis P51990 I 0.814
AAB59951 Xenopus laevis AAB59951 I 0.814
AAI06633 Xenopus laevis AAI06633 I 0.814
AAH43750 Xenopus laevis AAH43750 I 0.814
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.783
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.778
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.752
LOC538435 Bos taurus ENSBTAG00000038680 I 0.748
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.741
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.738
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.729
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.717
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.710
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.710
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.710
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.704
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.703
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.703
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.703
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.703
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.703
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.703
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.703
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.703
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.703
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.703
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.703
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.703
AAA49949 Xenopus laevis AAA49949 I 0.703
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.703
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.703
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.703
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.703
P51968 Xenopus laevis P51968 I 0.703
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.703
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.703
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.703
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.703
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.703
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.703
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.703
HNRNPA1 Homo sapiens ENSG00000135486 D 0.703
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.703
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.703