ENSSTOG00000009092 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000009092 T41618_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.964
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.786
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.786
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.786
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000008144 RRM 12 81
ENSSTOP00000008144 RRM 103 172

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.964
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.964
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.964
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.964
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.964
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.964
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.964
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.964
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.964
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.964
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.964
LOC100068539 Equus caballus ENSECAG00000000782 I 0.964
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.964
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.964
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.964
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.964
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.964
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.964
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.964
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.964
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.964
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.964
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.964
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.957
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.957
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.957
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.957
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.957
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.957
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.950
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.950
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.950
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.930
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.921
CBF67577 Xenopus laevis CBF67577 I 0.900
AAH46692 Xenopus laevis AAH46692 I 0.900
P51989 Xenopus laevis P51989 I 0.900
AAA49948 Xenopus laevis AAA49948 I 0.900
CBU92450 Xenopus laevis CBU92450 I 0.900
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.886
AAH43750 Xenopus laevis AAH43750 I 0.879
AAI06633 Xenopus laevis AAI06633 I 0.879
AAB59951 Xenopus laevis AAB59951 I 0.879
P51990 Xenopus laevis P51990 I 0.879
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.864
LOC516616 Bos taurus ENSBTAG00000002284 I 0.850
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.819
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.807
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.790
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.790
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.790
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.786
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.764
LOC538435 Bos taurus ENSBTAG00000038680 I 0.755
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.752
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.748
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.745
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.738
AAA49949 Xenopus laevis AAA49949 I 0.738
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.738
P51968 Xenopus laevis P51968 I 0.738
CBU92451 Xenopus laevis CBU92451 I 0.735
AAI69881 Xenopus laevis AAI69881 I 0.735
AAA49950 Xenopus laevis AAA49950 I 0.735
CBF67578 Xenopus laevis CBF67578 I 0.735
P51992 Xenopus laevis P51992 I 0.735
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.733
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.732
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.731
HNRNPA1 Homo sapiens ENSG00000135486 D 0.731
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.731
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.731
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.731
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.731
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.731
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.731
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.731
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.731
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.731
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.731
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.731
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.731
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.731
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.731
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.731
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.731
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.731
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.731
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.731
AAH45260 Xenopus laevis AAH45260 I 0.731
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.731
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.731
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.731
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.731
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.731
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.731
LOC781499 Bos taurus ENSBTAG00000021580 I 0.726
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.726
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.726
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.726
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.726
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.726
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.726
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.726
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.726
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.726
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.726
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.726
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.726
HNRNPA3 Homo sapiens ENSG00000170144 I 0.726
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.726
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.726
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.726
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.726
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.726
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.724
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.724
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.724
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.724
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.724
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.724
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.724
LOC100066794 Equus caballus ENSECAG00000023237 I 0.724
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.724
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.724
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.724
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.724
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.724
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.724
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.724
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.719
CBF67672 Xenopus laevis CBF67672 I 0.717
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.717
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.717
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.717
CBU92546 Xenopus laevis CBU92546 I 0.717
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.717
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.717
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.717
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.717
AAH72090 Xenopus laevis AAH72090 I 0.717
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.717
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.717
Gm8991 Mus musculus ENSMUSG00000059179 I 0.717
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.717
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.715
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.714
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.710
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.710
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.710
AAA49742 Xenopus laevis AAA49742 I 0.710
P17130 Xenopus laevis P17130 I 0.710
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.710
CBF67555 Xenopus laevis CBF67555 I 0.710
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.710
CBU92428 Xenopus laevis CBU92428 I 0.710
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.710
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.710
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.710
AAA49741 Xenopus laevis AAA49741 I 0.710
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.710
LOC785445 Bos taurus ENSBTAG00000025621 I 0.710
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.710
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.710
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.710
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.710
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.708
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.707
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.707
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.704
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.703
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.703
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.703
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.703
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.703
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.703
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.703
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.703
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.703
LOC100054206 Equus caballus ENSECAG00000006699 I 0.701
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.701
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.701
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.700